Previous Publications

2014 Faculty Publications

Xinlei Wang, Wei Cheng, Prasant Mohapatra, Abdelzaher, T. “Enabling Reputation and Trust in Privacy-Preserving Mobile Sensing” in IEEE Transactions on Mobile Computing, vol. 13, no. 12, pp. 2777-2790, December 2014. IF: 2.912 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6671556

Yanfei Lu, Xin Li, Xing Wei, Tao Jing, Wei Cheng, Yan Huo, “Secured access control for vehicles in RFID systems on roads” in Personal and Ubiquitous Computing, vol. 18, no. 8, pp. 1893-1900, September 2014. IF: 1.616 http://link.springer.com/article/10.1007%2Fs00779-014-0794-z

Wei Cheng, Shengling Wang, Xiuzhen Cheng, “Virtual Track: Applications and Challenges of the RFID System on Roads”, in IEEE Network, vol. 28, no. 1, pp 42-47, January 2014. IF: 3.72 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6724105

Strack B, Jacobs K and Cios KJ. 2014. Simulating vertical and horizontal inhibition with short term dynamics in a multi-column multi-layer model of Neocortex. International Journal of Neural Systems, 24(5): 1440002 (2014) [19 pages] DOI: 10.1142/S0129065714400024. IF: 6.056 http://www.worldscientific.com/worldscinet/ijns

Strack B, Olmo J, DeShazo, Jennings C, Cios KJ and Clore JN. 2014. Impact of HbA1c Measurement on Hospital Readmission Rates: Analysis of 70,000 Clinical Database Patient Records. Hindawi Publishing Corp.: BioMed Research International, Volume 2014 (2014), Article ID 781670, 11 pages, http://dx.doi.org/10.1155/2014/781670, IF: 2.706 http://www.hindawi.com/journals/bmri/

Cano A, Nguyen DT, Ventura S and Cios KJ. 2014. ur-CAIM: An Improved CAIM Discretization Algorithm for Unbalanced and Balanced Data Sets. Soft Computing, October, DOI: 10.1007/s00500-014-1488-1, IF: 1.304 http://www.springer.com/engineering/computational+intelligence+and+complexity/journal/500

Cano A, Ventura S and Cios KJ. 2014. Scalable CAIM Discretization on Multiple GPUs Using Concurrent Kernels. The Journal of Supercomputing, July 2014, 69(1), pp 273-292, DOI: 10.1007/s11227-014-1151-8, IF: 0.841 http://www.springer.com/computer/swe/journal/11227

N. P. Nguyen, T. N. Dinh, Y. Shen, and My T. Thai, Dynamic social community detection and its applications, PLoS ONE, 2014. IF: 3.534 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0091431

T. N. Dinh and M. T. Thai, Network under Joint Node and Link Attacks: Vulnerability Assessment Methods and Analysis, IEEE/ ACM Transactions on Networking (ToN), 2014. IF:1.986, http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6805229

T. N. Dinh, H. Zhang, Y. Shen, D. T. Nguyen, and M. T. Thai, Cost-effective Viral Marketing for Time-critical Campaigns in Large-scale Social Networks, IEEE/ ACM Transactions on Networking (ToN), 2014. IF: 1.986 http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6678627

N. P. Nguyen, M. A. Alim, T. N. Dinh, M. T. Thai, A method to detect communities with stability in social networks, Social Network Analysis and Mining, 2014 http://link.springer.com/article/10.1007%2Fs13278-014-0224-2

Y Shen, T. N Dinh, M. T. Thai, HT Nguyen, Staying safe and visible via message sharing in online social networks, Journal of Combinatorial Optimization 28 (1), 186-217, 2014. IF: 1.043 http://link.springer.com/article/10.1007%2Fs10878-013-9667-z

T. N. Dinh and M. T. Thai, Bound and Exact Methods for Assessing Link Vulnerability in Complex Networks, Journal of Combinatorial Optimization (JOCO), 2014, IF: 1.043 http://link.springer.com/article/10.1007%2Fs10878-014-9742-0

S. Gharibian, J. Kempe. Hardness of approximation for quantum problems, Quantum Information & Computation 14 (5 & 6): 517-540, 2014. IF: 1.625 http://www.rintonpress.com/xxqic14/qic-14-56/0517-0540.pdf

D. Berry, R. Cleve, S. Gharibian. Gate-efficient discrete simulations of continuous-time quantum query algorithms. Quantum Information & Computation 14 (1 & 2): 0001-0030, 2014. IF: 1.625, http://www.rintonpress.com/xxqic14/qic-14-12/0001-0030.pdf

Mayo, M, Abdelzaher, A, Perkins, EJ, Ghosh, P. Top-level dynamics and the regulated gene response of feed-forward loop transcriptional motifs. Physical Review E, 90:3, pp. 032706-1 – 032706-12, 2014, IF: 2.326

Nazi, A, Raj, M, Francesco, M, Ghosh, P, Das, S.K. Deployment of Robust Wireless Sensor Networks using Gene Regulatory Networks: an Isomorphism-based Approach, Pervasive and Mobile Computing, 13, pp. 246-257, 2014, IF: 1.667.

Pokrajac D., Lazarevic A., Kecman V., Marcano A., Markushin Y., Vance T., Reljin N., McDaniel S., Melikechi N., Automatic Classification of Laser-Induced Breakdown Spectroscopy (LIBS) Data of Protein Biomarker Solutions, Applied Spectroscopy, Vol. 68, Iss. 9, pp. 1067-1075, 2014 IF: 2.014

D. Wijayasekara, O. Linda, M. Manic, C. Rieger, "Mining Building Energy Management System Data Using Fuzzy Anomaly Detection and Linguistic Descriptions," in IEEE Transactions on Industrial Informatics, vol. 10, no. 3, pp. 1829-1840, 03 June 2014. DOI: 10.1109/TII.2014.2328291. IF: 8.785

D. Wijayasekara, O. Linda, M. Manic, C. Rieger, "FN-DFE: Fuzzy-Neural Data Fusion Engine for Enhanced Resilient State-Awareness of Hybrid Energy Systems," Accepted for publication in IEEE Transactions on Cybernetics, May 2014.  DOI: 10.1109/TCYB.2014.23238913. IF: 3.236

T. Vollmer, M. Manic, O. Linda, "Autonomic Intelligent Cyber Sensor to Support Industrial Control Network Awareness," in IEEE Transactions on Industrial Informatics, vol. 10, no. 2, pp. 1647-1658, May 2014.  DOI: 10.1109/TII.2013.2270373. IF: 8.785

T. Vollmer, M. Manic, "Cyber-Physical System Security with Deceptive Virtual Hosts for Industrial Control Networks," in IEEE Transactions on Industrial Informatics, vol. 10, no. 2, pp. 1337-1347, May 2014.  DOI: 10.1109/TII.2014.2304633. IF: 8.785

B.T. McInnes and M. Stevenson. Determining the difficulty of word sense disambiguation. Journal of Biomedical Informatics. 2014 Feb; 47:83-90, doi: 10.1016/j.jbi.2013.09.009, IF: 2.482

Xiangyu Liu, Bin Wang, Xiaochun Yang, Meng Yu, Wanyu Zang, Obtaining K-obfuscation for profile privacy in social networks. Security and Communication Networks 7(9): 1384-1398 (2014) http://onlinelibrary.wiley.com/doi/10.1002/sec.871/abstract;jsessionid=8FEB08F7D571853240A8042AD67BDF02.f04t04, IF 0.433

Yan Huo, Yumeng Lu, Wei Cheng, Tao Jing, “Vehicle Road Distance Measurement and Maintenance in RFID Systems on Roads”, in IEEE ICCVE 2014, Nov. 3-7, Austria. http://www.iccve.orgTao Jing, Fan Zhang, Wei Cheng, Yan Huo, Xiuzhen Cheng, “Online Auction Based Relay Selection for Cooperative Communications in CR Networks”, in WASA 2014, June 2014, China. http://www.cs.gsu.edu/WASA2014

David Jackson, Wanyu Zang, Qijun Gu, Wei Cheng “Exploiting and Defending Trust Models in Cooperative Spectrum Sensing”, in WASA 2014, June 2014, China. http://www.cs.gsu.edu/WASA2014

Tao Jing, Xuewei Cui, Wei Cheng, Shixiang Zhu, Yan Huo, “Enabling Smartphone Based HD Video Chats by Cooperative Transmissions in CRNs”, in WASA 2014, June 2014, China. http://www.cs.gsu.edu/WASA2014

Wei Cheng, Jindan Zhu, Prasant Mohapatra, Jie Wang, “Time and Energy Efficient Localization”, in IEEE SECON 2014, June 2014, Singapore. http://secon2014.ieee-secon.org

Y. Song and T. N. Dinh, Optimal Containment of Misinformation in Social Media: A Scenario-based Approach, International Workshop on Computational Networks (CSoNet), Hawaii, Lecture Note in Computer Science, 2014 http://link.springer.com/chapter/10.1007%2F978-3-319-12691-3_40

Md. A. Alim, N. P. Nguyen, T. N. Dinh, and M. T. Thai, Vulnerability Analysis of Overlapping Communities in Complex Networks, in Proceedings of the 2014 IEEE/WIC/ACM International Conference on Web Intelligence (WI), 2014 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6927519

S. Mishra, T. N. Dinh, and M. T. Thai, Optimal Inspection Points for Malicious Attack Detection in Smart Grids, The 20th International Computing and Combinatorics Conference (COCOON), 2014, http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6927519

Bahman Rashidi, Carol Fung, and Tam Vu, “RecDroid: A Resource Access Permission Control Portal and Recommendation Service for Smartphone Users”. Workshop on Security and Privacy Aspects of Mobile Environment. 2014 (SPME14), http://dl.acm.org/citation.cfm?id=2646586

Carol Fung, M. Gharbaoui, F. Paolucci, A. Giorgetti, P. Castoldi, and B. Martini, “Quality of Interaction among Path Computation Elements for Trust-aware Inter-Provider Cooperation”. IEEE International Conference on Communications (ICC14), Sydney, Australia, 2014 http://icc2014.ieee-icc.org/

Carol Fung, Disney Lam, and Raouf Boutaba, “RevMatch: An Efficient and Robust Decision Model for Collaborative Malware Detection”. IEEE/IFIP Network Operation and Management Symposium (NOMS14). Krakow, Poland, 2014 http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6838251

S. Gharibian, Z. Landau, S. W. Shin, G. Wang. Tensor network non-zero testing, 14th Asian Quantum Information Science Conference (AQIS), August 20-24, 2014, in Kyoto, Japan. Presented by S. W. Shin. Preprint available at http://arxiv.org/abs/1406.5279.

S. Gharibian, J. Kempe. Hardness of approximation for quantum problems, ELC Workshop on Inapproximability, January 25-26, 2014, at University of Electro-Communications, Chofu, Japan. Invited talk.

M. Mayo, A. Abdelzaher, B. Kamapantula, E. Perkins, and P. Ghosh, Networks of interactions between feed-forward loop transcriptional motifs in gene-regulatory networks, BICT 2014, pp.1-4.

B. Kamapantula, M. Mayo, E. Perkins, A. Abdelzaher and P. Ghosh, Feature ranking in transcriptional networks: Packet receipt as a dynamical metric, BICT 2014, pp. 1-8, Best student paper award.

A. Abdelzaher, M. Mayo, E. Perkins and P. Ghosh. Correlating In silico Feed-forward Loop Knockout Experiments with the Topological Features of Transcriptional Regulatory Networks, BICT 2014, pp. 1-8.

B. K. Kamapantula, M. Mayo, E. Perkins and P. Ghosh. Dynamical impacts from structural redundancy of transcriptional motifs in gene-regulatory networks, BICT 2014, pp. 1-8.

S. Das, R. Pidaparti and P. Ghosh. Modeling Self-organization of Microtubules from Tubulins, BICT 2014, pp.1-4.

Mayo, M, Abdelzaher, A, Ghosh, P. Mixed Degree-Degree Correlations in Directed Social Networks, LNCS CSoNet, 2014, pp. 571-580, http://link.springer.com/chapter/10.1007%2F978-3-319-12691-3_42.

Ahmed F. Abdelzaher, Ahmad F. Al-Musawi, Preetam Ghosh, David S. Jackson, John A. Palesis and Jonathan P. Deshazo, Variations of Care Coordination Metrics for Sharing Patients among Physicians: A Social Network Analytic Approach, ACM BCB 2014, pp. 635-636, http://dl.acm.org/citation.cfm?id=2660811.

Winfrey, C.M., Baldwin, B.J., Cummings, M.A., Ghosh, P. OSM: An Evolutionary System of Systems Framework for Modeling and Simulation, ACM SpringSim 2014, pp. 1-8, http://dl.acm.org/citation.cfm?id=2664293.

Kecman V., Zigic Lj., Algorithms for Direct L2 Support Vector Machines, The IEEE International Symposium on INnovations in Intelligent SysTems and Applications, INISTA 2014, 978-1-4799-3020-3/14 ©2014 IEEE, Alberobello, Italy, June 2014 http://www.inista.org/

Zigic Lj., Kecman V., Variants and Performances of Novel Direct Learning Algorithms for L2 Support Vector Machines, in L. Rutkowski et al. (Eds.): ICAISC 2014, Part II, LNAI 8468, pp. 82–91, 2014 http://www.icaisc.eu/

Zigic Lj., Kecman V., Direct L2 Support Vector Machine Classifier and Performances of Its Two Implementations, Proceedings of the IEEE South-East Conf., Lexington, KY, March, 2014 http://ewh.ieee.org/reg/3/southeastcon2014/

V. Molano, C. Cobos, M. Mendoza, E. Herrera-Viedma, M. Manic, "Feature Selection based on Sampling and C4.5 Algorithm to Improve the Quality of Text Classification using Naive Bayes," Accepted for publication at the 13th Mexican International Conference on Artificial Intelligence, MICAI 2014, Tuxtla Gutierrez, Chiapas, Mexico, Nov. 16-24, 2014. http://www.micai.org/2014/

D. Wijayasekara, M. Manic, "Dynamic Fuzzy Force Field Based Force-Feedback for Collision Avoidance in Robot Manipulators," in Proc. 40th Annual Conference of the IEEE Industrial Electronics Society, IEEE IECON 2014, Dallas, TX- USA, Oct. 29 - Nov. 1, 2014. http://www.micai.org/2014/

D. Wijayasekara, M. Manic, M. McQueen, "Vulnerability Identification and Classification Via Text Mining Bug Databases," in Proc. 40th Annual Conference of the IEEE Industrial Electronics Society, IEEE IECON 2014, Dallas, TX- USA, Oct. 29 - Nov. 1, 2014. http://iecon2014.org/

D. Wijayasekara, M. Manic, "Data Driven Fuzzy Membership Function Generation for Increased Understandability," in Proc. of FUZZ-IEEE, 2014, within, IEEE World Congress On Computational Intelligence, WCCI 2014, Beijing, China, July 6-11, 2014. http://www.ieee-wcci2014.org/

K. McCarty, M. Manic, "Fuzzy Contexts (Type C) and Fuzzymorphism to Solve Situational Discontinuity Problems," in Proc. of FUZZ-IEEE, 2014, within, IEEE World Congress On Computational Intelligence, WCCI 2014, Beijing, China, July 6-11, 2014. http://www.ieee-wcci2014.org/

D. Wijayasekara, M. Manic, "Fuzzy Logic Based Force-Feedback for Obstacle Collision Avoidance of Robot Manipulators," in Proc. of IEEE 7th International Conference on Human System Interaction, IEEE HSI 2014, Lisbon, Portugal, June 16-18, 2014. http://sites.uninova.pt/hsi2014/

D. Wijayasekara, M. Manic, D. Gertman, "Driving Behavior Prompting Framework for Improving Fuel Efficiency," in Proc. of IEEE 7th International Conference on Human System Interaction, IEEE HSI 2014, Lisbon, Portugal, June 16-18, 2014. http://sites.uninova.pt/hsi2014/

K. Amarasinghe, D. Wijayasekara, M. Manic, "EEG based brain activity monitoring using Artificial Neural Networks," in Proc. of IEEE 7th International Conference on Human System Interaction, IEEE HSI 2014, Lisbon, Portugal, June 16-18, 2014. http://sites.uninova.pt/hsi2014/

K. McCarty, M. Manic, "A Database Driven Memetic Algorithm for Fuzzy Set Optimization," in Proc. of IEEE 7th International Conference on Human System Interaction, IEEE HSI 2014, Lisbon, Portugal, June 16-18, 2014,  http://sites.uninova.pt/hsi2014/

K. Amarasinghe, D. Wijayasekara, M. Manic, "Neural Network Based Downscaling of Building Energy Management System Data," in Proc. IEEE International Symposium on Industrial Electronics, ISIE 2014, Istanbul, Turkey, June 1-4, 2014. http://www.isie.boun.edu.tr/

O. Linda, D. Wijayasekara, M. Manic, M. McQueen, "Optimal Placement of Phasor Measurement Units in Power Grids Using Memetic Algorithms," in Proc. IEEE International Symposium on Industrial Electronics, ISIE 2014, Istanbul, Turkey, June 1-4, 2014.  http://www.isie.boun.edu.tr/

H. Hess, V. Gupta, D. Wijayasekara, E. William, M. Huff, O. Linda, M. Krei, M. Manic, A. Thakker, F. Rufus, J. Govar, "State of Charge Indicator (SOCI) Design for Li/CFx Battery", in Proc. 2014 Army Power Sources Conference, pp. 1-6, Jun. 9-12, 2014.  http://www.powersourcesconference.com

M. Manic, D. Wijayasekara, K. Amarasinghe, J. Hewlett, K. Handy, C. Becker, B. Patterson, R. Peterson, "Next Generation Emergency Communication Systems via Software Defined Networks," in Proc. GENI Research and Educational Experiment Workshop (GREE 2014) - Jointly with the 19th GENI Engineering Conference (GEC 19), Atlanta Georgia, Mar. 19-20 2014, http://groups.geni.net/geni/wiki/APRAGENI/GREE2014

B.T. McInnes, T. Pedersen, Y. Liu, S. Pakhomov, and G.B. Melton. U-path: An undirected path-based measure of semantic similarity. Appears in the Proceedings of the Annual Symposium of the American Medical Informatics Association (AMIA), November 2014 http://www.amia.org/amia2014

Jonathan Katz, Aggelos Kiayias, Hong-Sheng Zhou, Vassilis Zikas, “Distributing the Setup in Universally Composable Multi-Party Computation”, PODC 2014 -- ACM Symposium on Principles of Distributed Computing, http://dl.acm.org/citation.cfm?doid=2611462.2611480

Shafi Goldwasser, Dov Gordon, Vipul Goyal, Abhishek Jain, Jonathan Katz, Feng-Hao Liu, Amit Sahai, Elaine Shi, Hong-Sheng Zhou, “Multi-Input Functional Encryption”, EUROCRYPT 2014 -- Advances of Cryptology http://link.springer.com/chapter/10.1007%2F978-3-642-55220-5_32

Seung Geol Choi, Jonathan Katz, Dominique Schröder, Arkady Yerukhimovich, Hong-Sheng Zhou, “(Efficient) Universally Composable Two-Party Computation Using a Minimal Number of Stateless Tokens”, TCC 2014 -- Theory of Cryptography Conference http://link.springer.com/chapter/10.1007%2F978-3-642-54242-8_27

Min Li, Zili Zha, Wanyu Zang, Meng Yu, Peng Liu, Kun Bai. “Detangling Resource Management Functions from the TCB in Privacy-Preserving Virtualization.” In The 19th European Symposium on Research in Computer Security (ESORICS 2014). September 7-11, 2014, Wroclaw, Poland

Bin Wang, Xiaochun Yang, Wanyu Zang and Meng Yu. “Approximate Self-Adaptive Data Collection in Wireless Sensor Networks.” In The 9th International Conference on Wireless Algorithms, Systems, and Applications (WASA 2014). June 23-25, 2014, Harbin, China http://www.cs.gsu.edu/WASA2014

2013 Faculty Publications

Slawek J, Arodz T. ENNET: Inferring Large Gene Regulatory Networks from Expression Data using Gradient Boosting. BMC Systems Biology 7:106, 2013. Impact Factor: 2.98Federici G, Gao X, Slawek J, Arodz T, Shitaye A, Wulfkuhle JD, de Maria R, Liotta LA, Petricoin EF. Systems Level Network Analysis of the NCI-60 Cancer Cell Lines by Alignment of Protein Pathway Activation Modules with Multiple "-omic" Data Fields and Therapeutic Response Signatures. Molecular Cancer Research 11:676-685, 2013. Impact Factor: 4.353

Arodz T, Plonka PM. Sequence and Structure Space Model of Protein Divergence driven by Point Mutations. Journal of Theoretical Biology 330:1-8, 2013. Impact Factor: 2.351

Arodz T, Bonchev D, Diegelmann RF. Network Approach to Wound Healing. Advances in Wound Care 2: 499-509, 2013

Shraboni Jana, Kai Zeng, Wei Cheng, Prasant Mohapatra, “Trusted Collaborative Spectrum Sensing for Mobile Cognitive Radio Networks”, in IEEE Transactions on Information Forensics and Security, vol. 8, no.9, pp. 1497-1507, 2013, Impact Factor 1.895.

Xiaoshuang Xing, Tao Jing, Wei Cheng, Yan Huo, Xiuzhen Cheng, “Spectrum Prediction in Cognitive Radio Networks”, IEEE Wireless Communications, vol. 20, no. 2, pp. 90-96, April 2013, Impact Factor 3.74.

Wei Cheng, Nan Zhang, Min Song, Dechang Chen, Xiuzhen Cheng, “Time-Bounded Essential Localization for Wireless Sensor Networks”, IEEE/ACM Transactions on Networking vol. 21, no.2, pp. 400-412, April 2013, Impact Factor 2.014.

Nguyen DT, Nguyen CD, Hobson R, Kurgan LA and Cios KJ. 2013. mi-DS: Multiple-Instance Learning Algorithm. IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics, 43(1)143-154, Impact Factor 3.236

Dinh TNand Thai MT, Community Detection in Scale-free Networks: Approximation Algorithms for Maximizing Modularity, IEEE Journal on Selected Areas in Communications: Special Issue on Network Science (JSAC), Vol. 31, Issue 6, pp. 997-1006, 2013, Impact Factor 3.121

Tiwari R, Dinh TN, and Thai TM, On Centralized and Localized approximation algorithms for Interference-Aware Broadcast Scheduling, IEEE Transaction on Mobile Computing (TMC), Vol. 12, Issue 2, pp. 233-247, 2013, Impact Factor 2.395

Ghag, G, Ghosh P., Mauro, A., Rangachari V. and Vaidya, A. Stability Analysis of 4-species A-beta Aggregation Model: A Novel Approach to Obtaining Physically Meaningful Rate Constants.Applied Mathematics and Computation, 224: 205-215, 2013, Impact factor: 1.349

Santos, AR, Barbosa, E, Fiaux, K, Zurita-Turk, M, Chaitankar, V, Kamapantula, B, Abdelzaher, A, Ghosh, P, Tiwari, S, Barve, N, Jain, N, Barh, D, Silva, A, Miyoshi, A, and Azevedo, V. Pannotator: An automated tool for annotation of pan-genomes. Genet. Mol. Res. 12 (3): 2982 – 2989, 2013, Impact factor: 0.99

Debmalya Barh, Neha Jain, Sandeep Tiwari, John K Field, Elena Padin-Iruegas, Alvaro Ruibal, Rafael López, Michel Herranz, Antaripa Bhattacharya, Lucky Juneja, Cedric Viero, Artur Silva, Anderson Miyoshi, Anil Kumar, Kenneth Blum, Vasco Azevedo, Preetam Ghosh, Triantafillos Liloglou. A novel in silico reverse-transcriptomics-based identification and blood-based validation of a panel of sub-type specific biomarkers in lung cancer, BMC Genomics, 14, Suppl 6: S5, 2013, Impact factor: 4.4

Kamapantula, B, Abdelzaher, A, Ghosh, P., Mayo, M., Perkins, E., and Das, S.K. Leveraging the Robustness of Genetic Networks: A Case Study on Bio-inspired Wireless Sensor Topologies. Journal of Ambient Intelligence and Humanized Computing, 2013, DOI : 10.1007/s12652-013-0180-0, Impact factor: 1.77

Barh, D, Gupta, K, Jain, N, Khatri, G, Leon Sicairos, N, Tiwari, S, Rahangdale, S, Verma, A, Hassan, S, Rodrigues dos Santos, A, Ali, A, Thiao Juca Ramos, R, Miyoshi, A, Silva, A, Kumavath, R, Kumar, A, Ghosh, P, Blum, K, Misra, AN and Azevedo, V. Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diptheriae, M. tuberculosis, C. ulcerans, Y. pestis and E. coli targeted by Piper betel compounds, Journal of Integrative Biology, 2013, Impact factor: 4.321

Strack R., Kecman V., Strack B., Li Q., Sphere Support Vector Machines for Large Classification Tasks, Neurocomputing, Vol. 101, pp. 59–67, 2013, Impact Factor 1.634

Li Q., Salman R., Test E., Strack R., Kecman V., Parallel Multi-task Cross Validation for Support Vector Machine Using GPU, Journal of Parallel and Distributed Computing, Vol. 73, Issue 3, pp. 293-302, 2013, 1.116

Chengpo Mu, Meng Yu, Yingjiu Li, Wanyu Zang. “Risk balance defense approach against intrusions for network server.” International Journal of Information Security. October 2013. http://link.springer.com/article/10.1007%2Fs10207-013-0214-9.

Yan Yang, Yulong Zhang, Alex Hai Wang, Meng Yu, Wanyu Zang, Peng Liu, Sushil Jajodia,“Quantitative survivability evaluation of three virtual machine-based server architectures”. Journal of Network and Computer Applications, Volume 36, Issue 2, March 2013, Pages 781–790.

Gao X, Arodz T. Detecting Differentially Co-expressed Genes for Drug Target Analysis. In: "Proc. International Conference on Computational Science ICCS'2013, Barcelona, Spain, 5-7 June", Procedia Computer Science 18:1392-1401, Elsevier, 2013.Tao Jing, Xing Wei, Wei Cheng, Mingyang Guan, Yan Huo, “Emergent Information Diffusion in RFID Systems on Roads”, in IEEE ICCVE 2013, December 2-6, 2013, Las Vegas, USA.

Tao Jing, Xingni Li, Wei Cheng, Yan Huo, “Speeding Detection in RFID Systems on Roads”, in IEEE ICCVE 2013, December 2-6, 2013, Las Vegas, USA.

Wei Cheng, “Engineering Challenges in RFID Systems on Roads”, in ICAPEM 2013, Nov. 21-22, 2013, Shanghai, China.

Yanfei Lu, Xin Li, Xing Wei, Tao Jing, Wei Cheng, Yan Huo, “Secured Access Control for Vehicles in RFID Systems on Roads” in IIKI 2013, October 18-20, 2013, Beijing China.

Bowu Zhang, Wei Cheng, Limin Sun, Xiuzhen Cheng, Taieb Znati, Mznah A. Al-Rodhaan, Abdullah Al-Dhelaan, “Queuing Modeling for Delay Analysis in Mission Oriented Sensor Networks under the Protocol Interference Model”, in ACM MiSeNet’13, October 4, 2013, Miami, Florida, USA. (Best Paper Award)

Wei Zhou, Tao Jing, Wei Cheng, Tao Chen, Yan Huo, “Combinatorial Auction Based Channel Allocation in Cognitive Radio Networks”, in CROWNCOM, July 8-10, 2013, Washington DC, USA.

Tao Jing, Xiaoshuang Xing, Wei Cheng, Yan Huo, Taieb Znati , “Cooperative Spectrum Prediction in Multi-PU Multi-SU Cognitive Radio Networks” in CROWNCOM, July 8-10, 2013, Washington DC, USA.

Xianfu Chen, Tao Chen, Wei Cheng, Honggang Zhang, “Reciprocity Inspired Learning for Opportunistic Spectrum Access in Cognitive Radio Networks,” in CROWNCOM, July 8-10, 2013, Washington DC, USA.

Wei Cheng, Kefeng Tan, Victor Omwando, Jindan Zhu, Prasant Mohapatra, “RSS-Ratio for Enhancing Performance of RSS-based Applications, in IEEE INFOCOM, April 2013, Turin, Italy.

Xinlei Wang, Wei Cheng, Prasant Mohapatra, Tarek Abdelzaher, “AnonyTrust: An Provenance-based Scheme towards Anonymous Trust in Participatory Sensing”, in IEEE INFOCOM, April 2013 , Turin, Italy.

Ningning Cheng, Xinlei Wang, Wei Cheng, Prasant Mohapatra, Aruna Seneviratne, “Characterizing Privacy Leakage of Public WiFi Networks for Users on Travel”, in IEEE INFOCOM, April 2013, Turin, Italy.

Strack B, Jacobs K and Cios KJ. 2013. Biological Restraint on the Izhikevich Neuron Model Essential for Seizure Modeling. Conf. Proceedings of the 6th November, 395-398; Student Best Paper Award

Strack B, Jacobs K and Cios KJ. 2013. Simulating Lesions in Multi-layer, Multi-columnar Model of Neocortex. Conf. Proceedings of the 6th Int. IEEE EMBS Conference on Neural Engineering, San Diego, 6-8 November, 835-838

Dinh TN, Nguyen NP, and Thai MT, An Adaptive Approximation Algorithm for Community Detection in Dynamic Scale-free Networks, in Proceedings of the 32nd IEEE Int. Conference on Computer Communications, (INFOCOM) Mini-Conference, Turin, Italy, 2013

Nguyen DT, Zhang H, Das S, Thai MT, and Dinh TN, Least Cost Influence in Multiplex Social Networks: Model Representation and Analysis, The IEEE International Conference on Data Mining (ICDM), Dallas, Dec. 2013

Zhang, Dinh TN, and Thai MT, Maximizing the Spread of Positive Influence in Online Social Networks, The 33rd IEEE International Conference on Distributed Computing Systems (ICDCS), Philadelphia, 2013

Carol Fungand Raouf Boutaba, "Design and Management of Collaborative Intrusion Detection Networks". The 15th IFIP/IEEE International Symposium on Integrated Network Management (IM 2013). Dissertation Paper. Ghent, Belgium, 2013. Best Dissertation Award

Nalluri, J, Kamapantula, B, Ghosh, P, Barh, D, Jain, N, Juneja, L, Barve, N. Determining miRNA-disease associations using bipartite graph modelling, ACM BCB 2013, pp 672-674.

Nazi, A, Raj, M, Francesco, M.D, Ghosh, P, Das, S.K. Robust Deployment of Wireless Sensor Networks using Gene Regulatory Networks, ICDCN 2013, pp. 192-207.

Abdelzaher, A, Kamapantula, B, Ghosh, P., and Das, S.K. A Theoretical Framework for Quantifying the Robustness of Biological Network Topologies, In proc. of Complex Network Dynamics Workshop (CoNeD 2013) in conjunction with ICDCN 2013, pp. 1-6.

Zigic Lj., Strack R., Kecman V., L2 Support Vector Machines Revisited - Novel Direct Learning Algorithm and Some Geometric Insights, Proc. of 19th 339, 2013

Test E., Zigic Lj., Kecman V., Feature Ranking Using Gini Index, Scatter Ratios, and Nonlinear SVM, Proc. of IEEE South-East Conf., Jacksonville, FL, April 4-7, 2013

Albarakati N., Kecman V., Fast Neural Network Algorithm For Solving Classification Tasks, Proc. of IEEE South-East Conf., Jacksonville, FL, April 4-7, 2013

Chung K, Katz J, Zhou H. Functional Encryption from (Small) Hardware Tokens. ASIACRYPT 2013, Bengaluru, India, December 1-5, 2013.

Katz J, Thiruvengadam A, Zhou H. Feasibility and Infeasibility of Adaptively Secure Fully Homomorphic Encryption. 16th International Conference on Practice and Theory in Public-Key Cryptography (PKC 2013), Nara, Japan, February 26 - March 1, 2013

Choi SG, Katz J, Wee H, Zhou H. Efficient, Adaptively Secure, and Composable Oblivious Transfer with a Single, Global CRS. 16th International Conference on Practice and Theory in Public-Key Cryptography (PKC 2013), Nara, Japan, February 26 - March 1, 2013

Fehr S, Katz J, Song F, Zhou H, Zikas V. Feasibility and Completeness of Cryptographic Tasks in the Quantum World. 10th Theory of Cryptography Conference (TCC 2013), Tokyo, Japan, March 3-6, 2013

Min Li, Wanyu Zang, Kun Bai, Meng Yu, Peng Liu. “MyCloud -- Supporting User-Configured Privacy Protection in Cloud Computing”. In Annual Computer Security Applications Conference. New Orleans, Louisiana USA, December 2013.

Carol Fung and Raouf Boutaba. "Intrusion Detection Networks: A Key to Distributed Security", CRC Press. 259 pages. ISBN: 978-1-4665-6412-1. November 2013.

Dinh TN, Thai MT, and Nguyen DT, A Unified Approach for Domination Problems on Different Network Topologies, Handbook of Combinatorial Optimization, (P. Pardalos, D. Du, and R. Graham eds), Springer Publisher, ISBN 978-1-4419-7996-4.Thai MT, Dinh TN, and Shen Y, Hardness and Approximation of Network Vulnerability, Handbook of Combinatorial Optimization, (P. Pardalos, D. Du, and R. Graham eds), Springer Publisher, ISBN 978-1-4419-7996-4.

2012 faculty publications

Arodz, T.& Plonka, P.M. Effects of point mutations on protein structure are nonexponentially distributed. Proteins: Structure, Function and Bioinformatics, 80:1780-1790, Wiley, 012 http://dx.doi.org/10.1002/prot.24073, Impact Factor: 3.392.

Mayo, M., Abdelzaher, A.F., Perkins, E.J., & Ghosh, P. (2012) Motif participation by genes in E. coli transcriptional networks. Front. Physio. 3:357. doi: 10.3389/fphys.2012.00357.Hassan, S., Schneider, M.P., Ramos, R.T., Carneiro, A., Lima, A.R., Guimarães, L.C., Ali, A., Bakhtiar, S., Pereira, U., Santos, A., Soares, S.C., Dorella, F., Pinto, A., Ribeiro, D., Barbosa, M.S., Almeida, S., Abreu, V.A., Aburjaile, F., Fiaux, K.K., Barbosa, E.G., Diniz, C., Rocha, F., Saxena, R., Tiwari, S., Zambare, V., Ghosh, P., Pacheco, L.G., Dowson, C., Kumar, A., Barh, D., Miyoshi, A., Azevedo, V., & Silva, A. Whole-Genome Sequence of Corynebacterium pseudotuberculosis Strain 162, Isolated from Camel, J Bacteriol. 2012 Oct; 194(20):5718-9. Impact factor: 3.825.

Shandilya, S., Ward, K.,  Kurz, M., & Najarian, K. "Non-Linear Dynamical Signal Characterization for Prediction of Defibrillation Success through Machine Learning", BMC Medical Informatics and Decision Making 2012, 12:116 doi:10.1186/1472-6947-12-116.

Manjili, M., Najarian, K., & Wang,X-Y. "Signatures of the tumor-immune interactions as biomarkers for breast cancer prognosis", Vol. 8, No. 6, pp. 703-711, Future Oncology, June 2012.

Belle, A., Hobson-Hargraves, R., & Najarian, K. "An Automated Optimal Engagement and Attention Detection System Using Electrocardiogram," Computational and Mathematical Methods in Medicine, vol. 2012, Article ID 528781, 2012.

Davuluri, P., Wu, J., Tang, Y., Cockrell, C. H., Ward, K. R., Najarian, K., & Hobson-Hargraves, R. "Hemorrhage Detection and Segmentation in Traumatic Pelvic Injuries," Computational and Mathematical Methods in Medicine, vol. 2012, Article ID 898430, 2012.

Wu, J., Davuluri, P., Ward, K. R., Cockrell, C., Hobson, R. &  Najarian, K.  Fracture Detection in Traumatic Pelvic CT Images, International Journal of Biomedical Imaging, Volume 2012, Article ID 327198, pp. 1-10, 2012.

Slawek, J., & Arodz, T. ADANET: Inferring Gene Regulatory Networks using Ensemble Classifiers.In: Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB'12), ACM New York, NY, USA, 2012 Pages 434-441 http://dl.acm.org/citation.cfm?doid=2382936.2382992.

Gao, X.,& Arodz, T.  Robust differential co-expression discovery: an insight into pharmacodynamics of tyrosine kinase inhibitor In: Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB'12), ACM New York, NY, USA, 2012 Pages 604-606 http://dl.acm.org/citation.cfm?doid=2382936.2383037.

Chaitankar, V., Ghosh P., Elasri, M., Gust, K., & Perkins, E. Genome scale inference of transcriptional regulatory networks using mutual information on complex interactions, Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine (BCB), 2012, pp. 643-648.

Chaitankar, V., Ghosh, P., Elasri, M., Gust, K., & Perkins, E. sCoIn: A Scoring algorithm based on COmplex INteractions for reverse engineering regulatory networks, Proceedings of the IEEE 12th International Conference on Bioinformatics and Bioengineering (BIBE), 2012, pp. 1-6.

Abdelzaher, A., Kamapantula, B., Ghosh, P., & Das, S.K. Empirical Prediction of Packet Transmission Efficiency in Bio-Inspired Wireless Sensor Networks, Proceedings of the 2012 IEEE 12th International Conference on Intelligent Systems Design and Applications (ISDA), pp. 271-276.

Kamapantula, B., Abdelzaher, A., Ghosh, P., Mayo, M., Perkins, E., & Das, S.K. Performance of Wireless Sensor Topologies Inspired by E. coli Genetic Networks, Proceedings of 8th IEEE PerCom International Workshop on Sensor Networks and Systems for Pervasive Computing, PerSens 2012, pp. 302-307.

Ghosh, P., Datta, B., & Rangachari, V. Computational Predictions for the Nucleation Mass and Lag times Involved in Aβ42 Peptide Aggregation. Proceedings of the 3rd International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC Bioinformatics), 2012, pp. 312-316.

Salman, R., & Kecman, V. Regression as Classification, IEEE SouthEast Conference Paper, Session: F3-A: Data Mining and Machine Learning I, Orlando, FL, March 2012.

Test, E., Kecman, V., Strack, R., Li, Q., & Salman, R. Feature Ranking for Pattern Recognition: A Comparison of Filter Methods, IEEE SouthEast Conference Paper, Session: F4-A: Data Mining and Machine Learning II, Orlando, FL, March 2012.

Strack, R., & Kecman, V. Minimal Norm Support Vector Machines for Large Classification Tasks, Proc. of the 11thIEEE international conference on machine learning applications (ICMLA 2012), Session 7, Boca Raton, FL, 2012.

Belle, A., Pfaffenberger, M.,  Hargraves, R. H.,  Najarian, K.‘An Automated Decision Making System for Detecting Loss of Attention In Individuals Using Real Time Processing of Electroencephalogram’, VII International Workshop on Biosignal Interpretation, Como, Italy, 2012.

Davuluri, P., Wu, J., Belle, A., Tang, Y., Cockrell, C., Ward, K., Hargraves, R., Najarian, K. ‘An Image Processing And Machine Learning Based Computer-Aided Decision Support For Traumatic Pelvic Injuries’, VII International Workshop on Biosignal Interpretation, Como, Italy, 2012.

Zhen, Y., Datta, B., Wang, A.H., Yu, M., & Zang, W. A Novel Spam Campaign in Online Social Networks. CoNeD 2013(workshop).

Liu, X., Wang, B., Yang, X., Yu, M. & Zang, W. Obtaining K-Obfuscation for Profile Privacy in Social Networks. The 7th International Conference on Frontier of Computer Science and Technology (FCST-12).

Gu, Q., Jones, K., Zang, W., Yu, M., & Liu, P. Revealing Abuses of Channel Assignment Protocols in Multi-Channel Wireless Networks: An Investigation Logic Approach. In the 17th European Symposium on Research in Computer Security (ESORICS 2012). Acceptance rate: 20%.

Li, M., Zhang, Y., Bai, K., Zang, W., Yu, M., & He, X. Improving Cloud Survivability through Dependency based Virtual Machine Placement (short paper). In the International Conference on Security and Cryptography (SECRYPT'12), Rome,Italy, 24-27 July 2012.

Gu, Q., Zang, W., Yu, M., & Liu, P. Collaborative Traffic-aware Intrusion Monitoring in Multi-channel Mesh Networks. In the 11th IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom-2012), Liverpool, UK, 25-27 June 2012.

Zhang, Y., Li, M., Bai, K., Yu, M., & Zang, W. Incentive Compatible Moving Target Defense against VM-Colocation Attacks in Clouds. In IFIP International Information Security and Privacy Conference 2012, Heraklion, Crete, Greece, 4-6 June 2012. Acceptance rate: 25%.

Pan, W., Zhang, W., Yu, M., & Jing, J. Improving Virtualization Security by Splitting Hypervisor into Smaller Components. In The 26th Annual WG 11.3 Conference on Data and Applications Security and Privacy (DBSec'12), Institut Mines-Télécom, Paris, France. July 11-13, 2012.

Meredith, M.A., Cios, K.J., McQuiston, A.R., Lim, H.K., Keniston, L.P. & Clemo, H.R. 2012.  Neuroanatomical Identification of Multisensory Convergence on Higher-level Cortical Neurons. In: The New Handbook of Multisensory Processing, Barry Stein (ed.), 81-96, MIT Press.

Chaitankar, V., Barh, D., Zambare, V., Azevedo, V., & Ghosh, P. Computational Regulomics: Information Theoretic Approaches Towards Regulatory Network Inference. In “OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences” ISBN 9781466562813. Edt by Barh D, Zambare V, Azevedo V. CRC Press, USA.

Barh, D., Yiannakopoulou, E.C., Salawu, E.O., Bhattacharjee, A., Chowbina, S., Ghosh, P., &Azevedo, V.: In silico Disease Models, In “Animal Biotechnology: Models in Discovery and Translation”, ISBN: 9780124160026, Edt by Verma and Singh. Elsevier, USA.

Silva A., Ramos, R., Carneiro, A., Almeida, S., Barbosa, S.,  Pinto, A.C., Cerdeira, L., Santos, A., Soares, S., Guimaraes, L., Barbosa, E., Figueira, F., Souza, F., Abreu, V.C., Dorella, F., Pacheco, L., Ghosh, P., Zambare, V., Barve, N., Tiwari, S., Barh, D., Miyoshi, A., Schneider, M.P., & Azevedo, V. Corynebacterium pseudotuberculosis 316, complete genome. GenBank: CP003077.1, 14-NOV-2012.

Silva, A., Cerdeira, L., Bol, E., Barbosa, M.S., Muller, B., Helden, P.V., Santos, A.R., Ramos, R.T.J., Carneiro, A. R., Guimaraes, L.C., Aburjaile, F. F., Padua, U.D., Arbosa, E., Fiaux, K.K.,  Diniz ,C.A.A., Soares, S.C., Pinto, A.C., Almeida, S.S., Abreu, V.A.C., Hassan, S.S., Khatri, G., Rahangdale S, Gupta K, Verma A, Ghosh P, Zambare V, Kumavath RN, Barh D, Miyoshi A, Schneider, M.P.C., & Azevedo, V. Corynebacterium pseudotuberculosis P54B96, complete genome. GenBank: CP003385.1, 23-MAR-2012.

Silva, A., Lopes, T., Ramos, R.T.J., Carneiro, A.R., Barbosa, M.S., Santos, A.R., Guimaraes, L.C., Aburjaile, F.F., Padua, U.D., Barbosa, E., Fiaux, K.K., Diniz, C.A., Soares, S.C., Pinto, A.C., Almeida, S.S., Abreu, V.A.C., Hassan, S.S., Khatri, G., Rahangdale, S., Gupta, K., Verma, A., Kumavath, R.N., Ghosh, P., Zambare, V., Barh, D., Miyoshi, A., Schneider, M.P.C., & Azevedo, V. Corynebacterium pseudotuberculosis 267, complete genome. GenBank: CP003407.1, 20-JUN-2012.

Silva, A., Saleh, M. , Selim, S.A., Cerdeira, L., Ramos, R.T., Carneiro, A.R., Barbosa, S., Santos, A., Soares, S., Guimaraes, L., Diniz, C.A., Fiaux, K., Hassan, S.S., Ali, A., Barbosa, E., Figueira, F., Pinto, A.C., Almeida, S., Abreu, V.C., Dorella, F., Pacheco, L., Souza, F., Ghosh, P., Zambare, V., Barh, D., Miyoshi, A., Schneider, M.P.,  & Azevedo, V.  Corynebacterium  pseudotuberculosis 31, complete genome. GenBank:  CP003421.1, 14-NOV-2012.

Silva, A., Ramos, R. , Carneiro, A. R. , Cerdeira, L. , Barbosa, S., Santos, A., Soares, S., Guimaraes, L., Diniz, C.A.A., Fiaux, K., Hassan, S.S., Ali, A., Barbosa, E., Figueira, F., Pinto, A.C., Almeida, S., Abreu, V.C., Dorella, F., Pacheco, L., Souza, F., Dowson, C.G., Ghosh, P., Zambare, V., Barh, D., Miyoshi, A., Schneider, M.P.,  Azevedo, V.  Corynebacterium pseudotuberculosis 258, complete genome. GenBank:  CP003540.1, 22-MAY-2012.

Silva, A., Ramos, R., Carneiro, A.R.,  Barbosa, S.,  Santos, A., Soares, S.,  Guimaraes, L.,  Diniz, C.A.A.,  Fiaux, K.,  Hassan, S.S., Ali, A.,  Barbosa, E.,  Figueira, F.,  Pinto, A.C., Almeida, S., Abreu, V.C.,  Dorella, F.,  Pacheco, L.,  Dowson, C.G.,  Souza, F., Ghosh, P.,  Zambare, V.,  Barh, D., Miyoshi, A.,  Schneider, M.P.,  Azevedo, V. Corynebacterium pseudotuberculosis Cp162, complete genome. GenBank:  CP003652.1, 28-SEP-2012.

USA 8,145,585 Issued on: March 27, 2012. Automated methods and systems for the detection and identification of money service business transactions.  Inventors:  Najarian, K., & Darvish, A.

2011 faculty publications

Czech, W., Dzwinel, W., Goryczka, S., Arodz, T. and Dudek, A.Z. 2011. Exploring Complex Networks with Graph Investigator Research Application. Computing & Informatics, 30:381-410.

Lim, H.K., Keniston, L.P., Shin, J.H., Allman, B.L., Meredith, M.A. and Cios, K.J. 2011. Connectional Parameters Determine Multisensory Processing in a Spiking Network Model of Multisensory Convergence. Experimental Brain Research, 213(2-3):329-339.

Nguyen, C., Gardiner, K. and Cios, K.J. 2011. Protein Annotation from Protein Interaction Networks and Gene Ontology. Journal of Biomedical Informatics, 44(5):824-829.

Lim, H.K., Keniston, L.P. and Cios, K.J. 2011. Modeling of Multisensory Convergence with a Network of Spiking Neurons: A Reverse Engineering Approach. IEEE Transactions on Biomedical Engineering, 58(7):1940-1949.

Nguyen, D., Costa, A., Cios, K.J. and Gardiner, K. 2011. Machine Learning Methods Predict Locomotor Response to MK-801 in Mouse Models of Down Syndrome. Journal of Neurogenetics, 25(1-2):40-51.

Achuthan, S., Chung, B.J., Ghosh, P., Rangachari, V. and Vaidya, A. 2011. A Modified Stokes Einstein Equation for Aβ Aggregation. BMC Bioinformatics, 12(Suppl. 10):S13: 1-13.

Mayo, M., Perkins, E. and Ghosh, P. 2011. First-Passage Time Analysis of a One-Dimensional Diffusion-Reaction Model: Application to Protein Transport along DNA. BMC Bioinformatics, 12(Suppl. 10):S18: 1-14.

Ghosh, S., Ghosh, P., Basu, K. and Das, S. 2011. A Discrete Event-Based Stochastic Simulation Platform for ‘in Silico’ Study of Molecular Level Cellular Dynamics. Journal of Biotechnology and Biomaterials, 1(5):1-19.

Cerdeira, L.T., Schneider, M.P., Pinto, A.C., de Almeida, S.S., Dos Santos, A.R., Barbosa, E.G., Ali, A., Aburjaile, F.F., de Abreu, V.A., Guimarães, L.C., Soares Sde, C., Dorella, F.A., Rocha, F.S., Bol, E., Gomes de Sá, P.H., Lopes, T.S., Barbosa, M.S., Carneiro, A.R., Jucá Ramos, R.T., Coimbra, N.A., Lima, A.R., Barh, D., Jain, N., Tiwari, S., Raja, R., Zambare, V., Ghosh, P., Trost, E., Tauch, A., Miyoshi, A., Azevedo, V. and Silva, A. Dec. 2011. Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain CIP 52.97, Isolated from a Horse in Kenya. J Bacteriol; 193(24):7025-6.

Salman, R., Kecman, V., Li, Q., Strack, R. and Test, E. 2011. Fast K-Means Algorithm Clustering. International Journal of Computer Networks & Communications (IJCNC), 3(4): 17-31.

Yang, T., Kecman, V., Cao, L.-B., Zhang, C.-Q. 2011. Margin-Based Ensemble Classifier for Protein Fold Recognition. Expert Systems with Applications, Elsevier, 38(10): 12, 348-12, 355.

Li Q., Salman R., Test E., Strack R., Kecman V., GPUSVM: A Comprehensive CUDA Based Support Vector Machine Package, Cent. Eur. J. Comp. Sci., 1(4), pp. 387-405, 2011

Rodríguez, J.T., Vitoriano, B., Montero, J., Kecman, V. 2011. A Disaster-Severity Assessment DSS Comparative Analysis. OR Spectrum, Springer-Verlag, 33(3): 451-479.

Mirshahi, N., Demir, S.U., Ward, K., Hobson, R., Hakimzadeh, R. and Najarian, K. 2011. An Adaptive Entropic Thresholding Technique for Image Processing and Diagnostic Analysis of Microcirculation Videos. International Journal on Advances in Life Sciences, 2(3-4): 133-142.

Liu, P. and Yu, M. Jan. 2011. Damage Assessment and Repair in Attack-Resilient Distributed Database Systems. Computer Standards and Interfaces, 33:96-107.

Nguyen, D., Dzwinel, W. and Cios, K.J. Visualization of Highly-Dimensional Data in 3D Space. 11th Int. Conf. on Intelligent Systems Design and Applications (ISDA 2011), Nov. 22-24, 2011, Cordoba, Spain: 225-230.

Mayo, M., Perkins, E. and Ghosh, P. Downstream Exploration of DNA-Bound Searching Proteins: a Diffusion-Reaction Model. IEEE 11th International Conference on Bioinformatics & Bioengineering BIBE 2011: 21-26.

Chaitankar, V., Ghosh, P. and Perkins, E. S-REVEAL: A Scalable implementation of REVEAL for Gene Regulatory Network Reconstruction. IEEE ISDA 2011: 1-6.

Chaitankar, V., Ghosh P., Elasri, M. and Perkins, E. A Scalable Gene Regulatory Network Reconstruction Algorithm Combining Gene Knock-Out Data. Third International Conference on Bioinformatics and Computational Biology, BiCob 2011: 74-79.

Ghosh, P., Mayo, M., Chaitankar, V., Habib, T., Perkins, E. and Das, S.K. Principles of Genomic Robustness Inspire Fault-Tolerant WSN Topologies: A Network Science-Based Case Study. The Seventh IEEE PerCom International Workshop on Sensor Networks and Systems for Pervasive Computing, PerSens 2011: 160-165.

Chen, W., Ward, K., Li, Q., Kecman, V., Najarian, K. and Menke, N. Agent-Based Modeling of Blood Coagulation System: Implementation Using a GPU-Based High Speed Framework. IEEE EMBC11 2011, Simulation, Boston: 145-148.

Salman, R., Kecman, V., Li, Q., Strack, R. and Test, E. Two-Stage Clustering with K-Means Algorithm. In A. Özcan, J. Zizka and D. Nagamalai (Eds.): Communications in Computer and Information Science, 1, Volume 162, Recent Trends in Wireless and Mobile Networks, Part 1,Springer-Verlag, 2011, Berlin, Heidelberg: 110-122.

Salman, R. and Kecman, V. The Effect of Cluster Location and Dataset Size on 2-Stage K-Means Algorithm. 10th International Workshop on Electronics, Control, Measurement and Signals, 10.1109/ IWECMS.2011.5952377, 2011, Liberec, Czech Republic: 1-5.

Belle, A., Hobson, R. and Najarian, K. A Physiological Signal Processing System for Optimal Engagement and Attention Detection. 2011 International Workshop on Biomedical and Health Informatics, part of IEEE International Conference Bioinformatics & Biomedicine, Nov. 12-15, 2011, Atlanta.

Ansari, S., Belle, A., Hobson, R., Ward, K. and Najarian, K. Reduction of Periodic Motion Artifacts from Impedance Plethysmography. 2011 International Workshop on Biomedical and Health Informatics, part of IEEE International Conference Bioinformatics & Biomedicine, Nov. 12-15, 2011, Atlanta.

Wu, J., Davuluri, P., Belle, A., Cockrell, C., Tang, Y., Ward, K., Hobson, R. and Najarian, K. Fracture Detection and Quantitative Measure of Displacement in Pelvic CT Images. 2011 International Workshop on Biomedical and Health Informatics, part of IEEE International Conference Bioinformatics & Biomedicine, Nov. 12-15, 2011, Atlanta.

Davuluri, P., Belle, A., Cockrell, C., Tang, Y., Ward, Najarian, K. and Hargraves, R. A Hybrid Approach for Hemorrhage Segmentation in Pelvic CT Scans. 2011 International Workshop on Biomedical and Health Informatics, part of IEEE International Conference Bioinformatics & Biomedicine, Nov. 12-15, 2011, Atlanta.

Shandilya, S., Ward, K., Kurz, M. and Najarian, K. Predicting Defibrillation Success with a Multiple-Domain Model Using Machine Learning. 2011 IEEE International Conference on Complex Medical Engineering(CME 2011), May 22-25, 2011, Harbin, Heilongjiang, China: 9-14.

Ansari, S., Ward, K. and Najarian, K. A New Method for Motion Artifact Reduction. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society(EMBC '11), 2011, Boston.

Chen, W., Menke, N., Li, Q., Kecman, V. and Najarian, K. Modeling of Blood Coagulation System: Implementation Using a GPU-Based High Speed Framework. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC '11), 2011, Boston.

Wu, J., Davuluri, P., Hobson, R., Cockrell, C., Ward, K. and Najarian, K. A New Hierarchical Method for Multi-Level Segmentation of Bone in Pelvic CT Scans. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC '11), 2011, Boston.

Luo, Y., Bsoul, R., Ward, K. and Najarian, K. Confidence-Based Classification with Dynamic Conformal Prediction and Its Applications in Biomedicine. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC '11), 2011, Boston.

Davuluri, P., Wu, J., Hobson, R., Cockrell, C., Ward, K. and Najarian, K. An Automated Method for Hemorrhage Detection in Traumatic Pelvic Injuries. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC '11), 2011, Boston.

Gu, Q., Yu, M., Zang, W. and Liu, P. Lightweight Attacks Against Channel Assignment Protocols in Mimc Wireless Networks. IEEE ICC, Communication and Information System Security Symposium, June 5-9, 2011, Kyoto, Japan: 1-6.

Pan, W., Jing, J., Xia, L., Liu, Z. and Yu, M. An Efficient RSA Implementation Without Precomputation. 7th International Conference on Information Security and Cryptology (INSCRYPT) 2011. Nov. 30-Dec. 3, 2011, Beijing.

Chaitankar, V., Zhang, C., Ghosh, P., Perkins, E., Gong, P. and Deng, Y. 2011. Predictive Minimum Description Length Principle Approach to Infer Gene Regulatory Networks. Springer Advances in Experimental Medicine and Biology,696:37-43.

Cerdeira, L., Schneider, M.P.C., Barbosa, M.S., Ramos, R.T.J., Carneiro, A.R., Santos, R.S., Lima, M., DAFonseca, V., Almeida, S.S., Santos, A.R., Soares, S.C., Pinto, A.C., Ali, A., Barbosa, E., Dorella, F.A., Rocha, F.S., Guimaraes, L.G., Belchior, S.B., Ghosh, P., Zambare, V., Barve, N., Tiwari, S., Barh, D., Miyoshi, A. and Azevedo, V. Corynebacterium pseudotuberculosis PAT10, complete genome. [July 18, 2011] GenBank: CP002924.1

Najarian, K. Methods and Systems for Analysis of Dynamic Biological Pathways, US. Patent 8,065,089, Nov. 22, 2011.

2010 faculty publications

Shin, J.H., Smith, D., Swiercz, W., Staley, K., Rickard, T., Montero, J., Kurgan, L. and Cios, K. 2010. Recognition of Partially Occluded and Rotated Images with a Network of Spiking Neurons. IEEE Transactions on Neural Networks, 21(11):1697-1708.

Yang, T., Kecman, V., Cao, L.-B. 2010. Classification by ALH-Fast Algorithm. Tsinghua Science & Technology, 15(3): 275-280.

Kao, J. W.-H., Berber, S. M. and Kecman, V. 2010. Blind Multiuser Detector for Chaos-Based CDMA Using Support Vector Machine. IEEE Transactions on Neural Networks, 21(8): 1221-1231.

Leonhardt, S., Ahrens, P. and Kecman, V. 2010. Analysis of Tidal Breathing Flow Volume Loops for Automated Lung Function Diagnosis in Infants, IEEE Transactions on Biomedical Engineering, 57(8): 1945-1953.

Mijailovich, S.M., Li, X.-C., del Álamoa, J.C., Griffiths, H., Kecman, V. and Geeves, M.A. 2010. Resolution and Uniqueness of Estimated Parameters of a Model of Thin Filament Regulation in Solution. Computational Biology and Chemistry,34: 19-33.

Yang, T. and Kecman, V. 2010. Face Recognition with Adaptive Local Hyperplane Algorithm. Pattern Analysis & Applications, Springer-Verlag, 13(1): 79-83.

Vasilache, S., Mirshahi, N., Ji, S.Y., Mottonen, J., Jacobs, D.J. and Najarian, K. 2010. A Signal Processing Method to Explore Similarity in Protein Flexibility. Advances in Bioinformatics, vol. 2010, Article ID 454671, doi:10.1155/2010/454671.

Nguyen, C.D., Gardiner, K.J., Nguyen, D., Costa, A. and Cios, K. miDivCon: Framework and Method for Multiple Instance Learning. Tenth International Conference on Intelligent Systems Design and Applications (ISDA 2010), Nov. 29-Dec. 1, 2010, Cairo: 495-500.

Lovelace, J., Rickard, T. and Cios, K. A Spiking Neural Network Alternative for the Analog to Digital Converter. International Joint Conference on Neural Networks at WCCI 2010, Barcelona, Spain, July 18-23, 2010. IEEE: New York, 463-470.

Lim, H.K., Keniston, L.P., Shin, J.H., Nguyen, C.D., Meredith, M.A. and Cios, K. A Neuronal Multisensory Processing Simulator, International Joint Conference on Neural Networks at WCCI 2010, Barcelona, Spain, July 18-23, 2010, IEEE: New York: 281-287

Li, Q., Kecman, V. and Salman, R. A Chunking Method for Euclidean Distance Matrix Calculation on Large Dataset Using Multi-GPU. IEEE’s ICMLA 2010 Conference, Dec. 12-14, 2010, Washington, D.C.

Kao, J.W.H., Berber, S.M. and Kecman, V. Adaptive Multi-Code Chaos-Based CDMA with Unequal Error Protection using Reduced Support Vector Machine. IEEE Global Communication Conference, GLOBECOM 2010, Dec. 6-10, 2010, Miami.

Li, Q., Salman, R. and Kecman, V. An Intelligent System for Accelerating Parallel SVM Classification Problems on Large Datasets Using GPU. IEEE’s ISDA conference 2010, Cairo.

Kao, J.W.H., Berber, S.M. and Kecman, V. Practical Training Data for Support Vector Machine Receiver in a Chaos-Based CDMA. 16th Asia-Pacific Conference on Communications 2010, Oct. 31-Nov. 3, 2010, Auckland, New Zealand.

Li, Q., Salman, R. and Kecman, V. Accelerating Weighted Euclidean Distance and Cosine Similarity Calculation Using GPU. IEEE’s IITA conference 2010, Qinhuangdao, China.

Kao, J.W.H., Berber, S.M. and Kecman, V. Reduced Support Vector Machine Detector for Chaos-Based CDMA Systems. 2010 International Symposium on Spread Spectrum Techniques and Applications 2010, Taichung, Taiwan: 215-220.

Kecman, V. and Brooks, J.P. Locally Linear Support Vector Machines and Other Local Models. WCCI 2010 IEEE World Congress on Computational Intelligence, Barcelona, Spain: 2615-2620.

Vance, T., Reljin, N., Lazarevic, A., Pokrajac, D., Kecman, V., Melikech, N., Marcano, A., Markushin, Y. and McDaniel, S. Classification of LIBS Protein Spectra Using Support Vector Machines and Adaptive Local Hyperplanes, WCCI 2010 IEEE World Congress on Computational Intelligence, Barcelona, Spain: 1207-1213.

Yang, T., Kecman, V., Cao, L. and Zhang, C. Testing Adaptive Local Hyperplane for Multi-Class Classification by Double Cross-Validation. 2010 IEEE World Congress on Computational Intelligence, Barcelona, Spain: 3895-3899.

Kecman, V. and Kikec, M. Erythemato-Squamous Diseases Diagnosis by Support Vector Machines and RBF NN, L. Rutkowski et al. (Eds.). ICAISC 2010, Part I, Lecture Notes in Computer Science, Artificial Intelligence and Soft Computing: 613-620.

Yang, T., Kecman, V., Cao, L. and Zhang, C. Combining Support Vector Machines and the T-Statistic for Gene Selection in DNA Microarray Data Analysis. In M.J. Zaki et al. (Eds.) PAKDD 2010, Part II, LNAI 6119, Springer-Verlag, Berlin, Heidelberg: 55-62.

Chen, W., Cockrell, C., Ward, K. and Najarian, K. Intracranial Pressure Level Prediction in Traumatic Brain Injury by Extracting Features from Multiple Sources and Using Machine Learning Methods. IEEE International Conference on Bioinformatics & Biomedicine (BIBM2010), Dec. 18-21, 2010, Hong Kong.

Ansari, S., Ward, K. and Najarian K. Adaptive Set-Membership Normalized Least Mean Squares: An Adaptive Filter for the Systems with Bounded Noise. Workshop on Mining and Management of Biological and Health Data, part of the 2010 IEEE International Conference on Bioinformatics & Biomedicine (BIBM2010), Dec. 18-21, 2010, Hong Kong.

Shandilya, S., Ward, K. and Najarian, K. A Time-Series Approach for Shock Outcome Prediction Using Machine Learning. First Workshop on Knowledge Engineering, Discovery and Dissemination in Health, part of the 2010 IEEE International Conference on Bioinformatics & Biomedicine (BIBM2010), Dec. 18-21, 2010, Hong Kong.

Bsoul, A.A.R., Ji, S.Y., Ward, K. and Najarian, K. A Unified Signal Processing and Machine Learning Method for Detection of Abnormal Heart Beats Using Electrocardiogram. First Workshop on Knowledge Engineering, Discovery and Dissemination in Health, part of the 2010 IEEE International Conference on Bioinformatics & Biomedicine (BIBM2010), Dec. 18-21, 2010, Hong Kong.

Ansari, S., Belle, A., Ward, K. and Najarian, K. Impedance Plethysmography on the Arms: Respiration Monitoring. First Workshop on Knowledge Engineering, Discovery and Dissemination in Health, part of the 2010 IEEE International Conference on Bioinformatics & Biomedicine (BIBM2010), Dec. 18-21, 2010, Hong Kong.

Vasilache, S., Smith, R., Wu, J., Davuluri, P., Ha, J., Ward, K., Cockrell, C. and Najarian, K. Predicting Pelvic Trauma Severity Using Features Extracted from Records and X-Ray and CT Images. First Workshop on Knowledge Engineering, Discovery and Dissemination in Health, part of the 2010 IEEE International Conference on Bioinformatics & Biomedicine (BIBM2010), Dec. 18-21, 2010, Hong Kong.

Smith, R., Ward, K., Cockrell, C., Ha, J. and Najarian K. Detection of Fracture and Quantitative Assessment of Displacement Measures in Pelvic X-ray Images. IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2010), March 14-19, 2010, Dallas.

Belle, A., Ji, S.Y., Ansari, S., Hakimzadeh, R., Ward, K. and Najarian, K. Frustration Detection with Electroencephalogram Signal using Wavelet Transform, Second International Conference on Advances in Biotechnologies (BIOTECHNO 2010), March 7-13, 2010, Cancun, Mexico.

Mirshahi, N., Demir, S.U., Ward, K., Hobson, R., Hakimzadeh, R. and Najarian, K. A Multi-Resolution Entropic-Based Image Processing Technique for Diagnostic Analysis of Microcirculation Videos. Second International Conference on Advances in Biotechnologies (BIOTECHNO 2010), March 7-13, 2010, Cancun, Mexico.

Demir, S., Mirshahi, N., Ward, K., Hobson, R.S., Hakimzadeh, R. and Najarian, K. Vessel Extraction of Microcirculatory Video Recordings Using Multi-Thresholding Based Verification Algorithm. Second International Conference on Advances in Biotechnologies (BIOTECHNO 2010), March 7-13, 2010, Cancun, Mexico.

Yu, M., Hai, W., Zang, W. and Peng, L. Evaluating Survivability and Costs of Three Virtual Machine-Based Server Architectures, SECRYPT 2010,Article No. 134, July 2010, Seville, Spain.

Heywoong, K., Qijun, Q., Yu, M., Zang, W. and Peng, L. Simulation Framework for Performance Analysis of Multi-Interface and Multi-Channel Wireless Networks in INET/OMNET++. Communications and Networking Simulation Symposium 2010 (CNS 2010), Article No. 101, Orlando, Fla.

Yang, T. and Kecman, V. 2010. Machine Learning by Adaptive Local Hyperplane Algorithm: Theory and Applications, VDM-Verlag, Saarbrücken, Germany.

Gu, Q., Zang, W. and Yu, M., eds. 2010. ICST International Workshop on Security in Emerging Wireless Communication and Networking Systems, Springer.

Cios, K. and Kurgan, L.A. 2010. Machine Learning Algorithms Inspired by Work of Ryszard Spencer Michalski. In J. Koronacki et al. (Eds.) Advances in Machine Learning I, SCI 262, Springer: 49-74.

Murrill, B.W. 2010. Fault-Based Testing, Encyclopedia of Software Engineering, 1(1): 300-307.

Najarian, K. and Vasiliache, S. 2010. Probably Approximately Correct Theory, Statistical Learning Theory. In N.M. Seel (Ed.): Encyclopedia of the Science of Learning, Springer.

2009 faculty publications

Yang, T. and Kecman, V. 2009. Adaptive Local Hyperplane Algorithm for Learning Small Medical Data Sets, Expert Systems. The Journal of Knowledge Engineering, Wiley Interscience, Blackwell Publishing, 26(4): 355-359.

Murphy, R.B., Young, B.R. and Kecman, V. 2009. Optimising Operation of a Biological Wastewater Treatment Application. ISA Transactions,48: 93-97.

Ji, S.Y., Ward, K., Ryan, K., Rickards, C., Convertino, V., Vyas, N., Stivoric, J. and Najarian, K. 2009. Prediction of Hypovolemia Severity Using ECG Signal with Wavelet Transformation Analysis from a Mobile Armband. Circulation, 120:S1441.

Ji, S.Y., Bsoul, A.A.R., Ward, K., Ryan, K., Rickards, C., Convertino, V. and Najarian, K. 2009. Incorporating Physiological Signals to Blood Loss Prediction Based on Discrete Wavelet Transformation. Circulation, 120:S1483.

Bsoul, A.A.R., Ji, S.Y.,Ward, K., Ryan, K., Rickards, C., Convertino, V. and Najarian, K. 2009. Prediction of Severity of Blood Volume Loss Using Features Based on P, T and QRS Waves. Circulation, 120:S1466.

Ward, K., Vyas, N., Ji, S.Y., Rickards, C., Ryan, K., Convertino, V., Jackson, R. and Najarian, K. 2009. Use of Low-Level Physiologic Signals and Machine Learning to Derive Important Homodynamic Variables during Acute Volume Loss. Circulation, 120:S1482-S1483.

Demir, S., Mirshahi, N., Ward, K., Hobson, R. and Najarian, K. 2009. Vessel Segmentation Based on Multi-Thresholding for Diagnostic Analysis of Microcirculation. Circulation, 120:S1491.

Ji, S.Y., Ward, K. and Najarian, K. Nov. 2009. Brain Mapping and Detection of Functional Patterns in fMRI Using Wavelet Transform; Application in Detection of Dyslexia. BMC Medical Informatics and Decision Making, 9: (Suppl. 1):S6.

Chen, W., Smith, R., Ji, S.Y., Ward, K. and Najarian, K. Nov. 2009. Automated Ventricular Systems Segmentation in Brain CT Images by Combining Low-Level Segmentation and High-level Template Matching. BMC Medical Informatics and Decision Making,9 (Suppl. 1):S4.

Vasilache, S., Ward, K. and Najarian, K. Nov. 2009. Unified Wavelet and Gaussian Filtering for Segmentation of CT Images; Application in Segmentation of Bone in Pelvic CT Images. BMC Medical Informatics and Decision Making, 9 (Suppl. 1):S8.

Smith, R. and Najarian, K. 2009. A Hierarchical Method Based on Active Shape Models and Directed Hough Transform for Segmentation of Noisy Biomedical Images; Application in Segmentation of Pelvic X-ray Images. BMC Medical Informatics and Decision Making, 9 (Suppl. 1):S2.

Ji, S.Y., Smith, R., Huynh, T. and Najarian, K. 2009. A Comparative Analysis of Multi-Level Computer-Assisted Decision Making Systems for Traumatic Brain Injuries. BMC Medical Informatics and Decision Making, 9(2).

Choi, H., Wang, J. and Hughes, E. Scheduling for Inform Gathering on Sensor Network. ACM Journal of Wireless Networks, Jan. 2009, 15(1).

Shin, J-H., Smith, D. Swiniarski, R., Dudek, E., White, A., Staley, K. and Cios, K. Analysis of EEG Epileptic Signals with Rough Sets and SVMs. AIME'09 (Artificial Intelligence in Medicine 2009), July 18-22, 2009, Verona, Italy: 325-334.

Thaicharoen, S., Altman, T., Gardiner, K. and Cios, K. Discovering Relational Knowledge from Two Disjoint Sets of Literatures Using Inductive Logic Programming. IEEE Symposium on Computational Intelligence and Data Mining (IEEE CIDM 2009), March 30-April 2, 2009, Nashville, Tenn.: 283-290.

Kecman, V. and Yang, T. Adaptive Local Hyperplane for Regression Tasks. IEEE International Joint Conference on Neural Networks, June 14-19, 2009, Atlanta.: 1566-1570.

Kecman, V. and Yang, T. Protein Fold Recognition with Adaptive Local Hyperplane Algorithm. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (IEEE CIBCB 2009), March 31-April 2, 2009, Nashville, Tenn.: 75-78.

Kecman, V. and Brooks, P.J. Locally Linear Support Vector Machines. INFORMS Annual Meeting, TA04, Joint Session ICS/DM Optimization in Data Mining/Machine Learning, presenter P.J. Brooks, Oct. 10-14, 2009, San Diego.

Ansari, S., Najarian, K., Ward, K. and Tiba, M.H. Extraction of Respiratory Rate from Impedance Signal Measured on Arm: A Portable Respiratory Rate Measurement Device. 2009 IEEE Conference on Bioinformatics and Biomedicine (IEEE BIBM 2009), Nov. 2009: 197-202.

Chen, W., Smith, R., Vasilache, S., Najarian, K., Ward, K., Cockrell, C. and Ha, J. Traumatic Pelvic Injury Outcome Prediction by Extracting Features from Relevant Medical Records and X-ray Images. 2009 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2009), Nov. 2009: 291-294.

Vasilache, S., Chen, W., Ward, K. and Najarian, K. Hierarchical Object Recognition in Pelvic CT Images. Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009), Sept. 3-6, 2009: 3533-3536.

Najarian, K., Hakimzadeh, R., Ward, K., Daneshvar, K. and Ji, S.Y. Combining Predictive Capabilities of Transcranial Doppler with Electrocardiogram to Predict Hemorrhagic Shock. Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009), Sept. 3-6, 2009: 2621-2624.

Hakimzadeh, R., Ji, S.Y., Smith, R., Ward, K., Daneshvar, K. and Najarian, K. Processing of Transcranial Doppler for Assessment of Blood Volume Loss. 2009 IEEE International Conference on Information Reuse & Integration (IRI '09), Aug. 10-12, 2009: 6-10.

Bsoul, A.A.R., Ji, S.Y., Ward, K. and Najarian, K. Detection of P, QRS, and T Components of ECG Using Wavelet Transformation. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-6.

Ji, S.Y., Chen, W., Ward, K., Rickard, C., Ryan, K., Convertino, V. and Najarian, K. Wavelet-Based Analysis of Physiological Signals for Prediction of Severity of Hemorrhagic Shock. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-6.

Chen, W. and Najarian, K. Segmentation of Ventricles in Brain CT Images Using Gaussian Mixture Model Method. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-6.

Demir, S., Mirshahi, N., Tiba, H., Draucker, G., Ward, K., Hobson, R. and Najarian, K. Image Processing and Machine Learning for Diagnostic Analysis of Microcirculation. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-5.

Vasilache, S. and Najarian, K. A Unified Method Based on Wavelet Filtering and Active Contour Models for Segmentation of Pelvic CT Images. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-5.

Smith, R. and Najarian, K. Splines and Active Model for Segmentation of Pelvic X-ray Images. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-6.

Olsen, G., Brilliant, S., Primeaux, D. and Najarian, K. An Image-Processing Enabled Dental Caries Detection System. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-8.

Olsen, G., Brilliant, S., Primeaux, D. and Najarian, K. Signal Processing and Machine Learning for Real-Time Classification of Ergonomic Posture with Unobtrusive On-Body Sensors; Application in Dental Practice. ICME International Conference on Complex Medical Engineering (CME 2009), April 9-11, 2009: 1-11.

Wang, J., Choi, H. and Jung, C. A Distributed Wireless Channel Assignment Algorithm with Collision Reduction. International Symposium on Collaborative Technologies and Systems (CTS 2009), Baltimore.

Gajic Z., M. Lim, D. Skataric, W. Su, V. Kecman, Optimal Control of Weakly Coupled Systems and Applications, CRC Press (Francis and Taylor), 2009

Gajic Z., M. Lim, D. Skataric, W. Su, V. Kecman, Optimal Control of Weakly Coupled Systems and Applications, Heritage Publishers, (Special Indian Edition), CRC Press (Francis and Taylor), 2009

2008 faculty publications

Choi, H., Wang, J. and Hughes, E. Jan. 2009. Scheduling for Information Gathering on Sensor Network. ACM Journal of Wireless Networks, 15: 127-140.

Yang, S., Kim, Y. and Choi, H. April 2008. Vehicle Identification using Discrete Spectrums in Wireless Sensor Networks. Journal of Networks, 3(4): 51-63.

Kurgan, L., Cios, K., Zhang, H., Zhang, T., Chen, K., Shen, S. and Ruan, J. 2008. Sequence-based Methods for Real Value Predictions of Protein Structure. Current Bioinformatics, 3(3): 183-196.

Gehrke, A., Sun, S., Kurgan, L., Ahn, N., Resing, K., Kafadar, K. and Cios, K. 2008. Improved Machine Learning Method for Analysis of Gas Phase Chemistry of Peptides. BMC Bioinformatics, 9: 515.

Yen, C-Y and Cios, K. 2008. Image Recognition System Based on Novel Measures of Image Similarity and Cluster Validity. Neurocomputing, 72: 401-412.

Nguyen, C. and Cios, K. 2008. GAKREM: A Novel Hybrid Clustering Algorithm. Information Sciences, 178: 4205-4227.

Nguyen, C., Mannino, M., Gardiner, K. and Cios, K. 2008. ClusFCM: Algorithm for Prediction of Protein Functions Using Homologies and Protein Interactions. Journal of Bioinformatics and Computational Biology, 6(1): 203-222.

Kurgan, L., Cios, K. and Chen, K. 2008. SCPRED: Accurate Prediction of Protein Structural Class for Sequences of Twilight-Zone Similarity with Predicting Sequences. BMC Bioinformatics, 9: 226.

Chiua, R.W.K., Chana, K.C.A., Gao, Y., Laua, V.Y.M., Zhenga, W., Leunge, T.Y., Foof, C.H.F., Xiec, B., Tsuia, N.B.Y, Lun, F.M.F., Zeef, B.C.Y., Laue, T.K., Cantorg, C.R. and Loa, Y.M.D. Dec. 23, 2008. Noninvasive Prenatal Diagnosis of Fetal Chromosomal Aneuploidy by Massively Parallel Genomic Sequencing of DNA in Maternal Plasma. PNAS, 105(51): 20458-20463.

Valentea, A.X.C.N., Roberts, S.B., Buck, G.A. and Gao, Y. 2008. Functional Organization of the Yeast Proteome by a Yeast Interactome Map. PNAS Early Edition: 1-6.

Yang, T. and Kecman, V. 2008. Adaptive Local Hyperplane Classification. Neurocomputing,71: 3001-3004.

Murrill, B.W. Feb. 2008. An Empirical, Path-oriented Approach to Software Analysis and Testing. Journal of Systems and Software, 81(2): 249-261.

Jeong, D.H., Darvish, A., Najarian, K., Yang, J. and Ribarsky, W. Jan. 2008. Interactive Visual Analysis of Time-Series Microarray Data. Visual Computer, 24(12): 1053-1066.

Najarian, K., DeMott II, R. and Cooper, J. 2008. Automatic Target Recognition and Classification in Aerial Photography. International Journal of Systems Signal Control and Engineering Application, 1(1): 1-14.

Wang, J. and Choi, H. Dec. 2008. Efficient Power Allocation for Multi-User OFDM System. GESTS Transactions on Computer Science and Engineering, 51(1).

Wang, J., Masilela, M. and Liu, J. April 2008. Transmission Buffer Management and Node Failure Recovery in Wireless Sensor Networks. Mediterranean Journal of Computers and Networks, 4(2): 44-53.

Wang, J. and Liu, J. Feb. 29, 2008. Uplink Relaying in Hybrid Wireless Networks with Interference Reduction. ACM Journal of Wireless Networks, ISSN 1022-0038 (print), 1572-8196 (online).

Nguyen, C., Gardiner, K., Nguyen, D. and Cios, K. Prediction of Protein Functions from Protein Interaction Networks: A Naïve Bayes Approach. Pacific Rim International Conference on Artificial Intelligence, Dec. 15-19, 2008, Hanoi, Vietnam: 788-798.

Thaichareon, S., Altman, T. and Cios, K. Structure-Based Document Model with Discrete Wavelet Transforms and Its Application to Document Classification. 7th Australasian Data Mining Conference,Nov. 2008, Glenelg, Australia, 87: 209-217.

Yang, T. and Kecman, V. Classification by ALH-Fast Algorithm. Fifth International Symposium on Neural Networks (ISNN 2008), Sept. 24-28, 2008, Beijing, China.

Chen, G., Warren, J., Yang, T. and Kecman, V. Adaptive K-Local Hyperplane (AKLH) Classifiers on Semantic Spaces to Determine Health Consumer Webpage Metadata. 21th IEEE International Symposium on Computer-Based Medical Systems (IEEE CBMS 2008), Jyväskylä, Finland: 287-289.

Kao, J., Berber, S. and Kecman, V. Blind Multi-user Detection of a Chaos-based CDMA System Using Support Vector Machines. 10th International Symposium on Spread Spectrum Techniques and Applications 2008, Bologna, Italy.

Ji, Y., Smith, R., Huynh, T. and Najarian, K. A Comparative Analysis of Multi-level Computer-Assisted Decision Making Systems for Traumatic Brain Injuries. BMC Medical Informatics and Decision Making, 9:2.

Najarian, K., DeMott II, R. and Cooper, J. Automatic Target Recognition and Classification in Aerial Photography. International Journal of Systems Signal Control and Engineering Applications 2008, 1(1): 1-14.

Ji, S.Y., Ward, K., Ryan, K., Rickard, C., Convertino, V. and Najarian, K. Heart Rate Variability Analysis Using Wavelet Transform to Predict Severity of Hemorrhagic Shock. American Heart Association (AHA) Resuscitation Science Symposium, Nov. 2008, New Orleans: 93.

Ji, S.Y. and Najarian, K. A Modified Maximum Correlation Modeling Method for fMRI Brain. IEEE Bioinformatics and Biomedicine (BIBM), International Workshop on Biomedical and Hearth Informatics (BHI), Nov. 3-5, 2008, Philadelphia: 64-49.

Chen, W., Smith, R., Ji, S.Y. and Najarian, K. Automated Segmentation of Lateral Ventricles in Brain CT Images. IEEE Bioinformatics and Biomedicine (BIBM), International Workshop on Biomedical and Hearth Informatics (BHI), Nov. 3-5, 2008, Philadelphia: 48-55.

Vasilache, S., Smith, R., Ji, S.Y., Najarian, K. and Huynh, T. Outcome Prediction in Traumatic Pelvic Injuries Using Maximum Similarity and Quality Measures. IEEE Information Reuse and Integration (IRI), July 2008: 82-85.

Vasilache, S. and Najarian, K. Automated Bone Segmentation from Pelvic CT Images. IEEE Bioinformatics and Biomedicine (BIBM), International Workshop on Biomedical and Heart Informatics (BHI), Nov. 3-5, 2008, Philadelphia: 41-47.

Smith, R. and Najarian, K. Automated Segmentation of Pelvic Bone Structure in X-Ray Radiographs Using Active Shape Models and Directed Hough Transform. IEEE Bioinformatics and Biomedicine (BIBM), International Workshop on Biomedical and Heart Informatics (BHI), Nov. 3-5, 2008, Philadelphia: 56-63.

Wang, J. and Liu, J. Video Authentication Against Correlation Analysis Attack in Wireless Network. 10th IEEE International Symposium on Multimedia (ISM 2008), Dec. 15-17, 2008, Berkeley, Calif.

Wang, J. and Choi, H. Defending against Middleman and Collision Attack in Wireless Networks. IEEE International Conference on Communications (ICC'09).

Gajic, Z., Lim, M., Skataric, D., Su, W. and Kecman V.2008. Optimal Control of Weakly Coupled Systems and Applications. CRC Press (Francis and Taylor).