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Saeedi S, Serrano M, Yang D, Brooks JP, Buck G, Arodz T, 2022. Group Testing Matrix Design for PCR Screening with Real-Valued Measurements. Journal of Computational Biology 29(12):1397-1411, https://doi.org/10.1089/cmb.2022.0413 IF: 1.549 (Q3 rank)

Hernandez S M, Bulut E, 2022. WiFi Sensing on the Edge: Signal Processing Techniques and Challenges for Real-World Systems, IEEE Communications Surveys & Tutorials, doi: 10.1109/COMST.2022.3209144 https://ieeexplore.ieee.org/document/9900419  IF: 33.84 (Q1 rank)

Chapnevis A, Guvenc I, Bulut E, 2022. IMSI Sharing based Dynamic and Flexible Traffic Aggregation for Massive IoT Networks, IEEE Internet of Things Journal,  doi: 10.1109/JIOT.2022.3155923 https://ieeexplore.ieee.org/document/9724246 IF: 10.238 (Q1 rank)

Cano A, Krawczyk B, 2022. ROSE: Robust Online Self-Adjusting Ensemble for Continual Learning on Imbalanced Drifting Data Streams. Machine Learning, 111:2561-2599, https://link.springer.com/article/10.1007/s10994-022-06168-x IF: 5.41 (Q2 rank)

Alberghini G, Barbon S, Cano A, 2022. Adaptive Ensemble of Self-Adjusting Nearest Neighbor Subspaces for Multi-Label Drifting Data Streams. Neurocomputing, 481:228-248, https://www.sciencedirect.com/science/article/abs/pii/S0925231222000984 IF: 5.78 (Q2 rank)

Solomon E, Woubie A and Cios KJ, 2022. UFace: An Unsupervised Deep Learning Face Verification System. Electronics, 11(23):3909; https://doi.org/10.3390/electronics11233909 IF: 2.69

Cranston DW, Nie J, Verstraete J, and Wesolek A, 2022. On Asymptotic Packing of Geometric Graphs. Discrete Applied Math. 322:142-152.  https://www.sciencedirect.com/science/article/pii/S0166218X2200292X IF: 1.254

Cranston DW, 2022. Kempe Equivalent List Edge-Colorings of Planar Graphs. Discrete Math (Special Issue in Honour of Landon Rabern). https://www.sciencedirect.com/science/article/pii/S0012365X22003867 IF: 0.961

Cranston DW, Lidicky B, Liu X, and Shantanam A, 2022. Planar Turan Numbers of Cycles: A Counterexample. Electronic Journal of Combinatorics. 29(3):P3.31,  https://www.combinatorics.org/ojs/index.php/eljc/article/view/v29i3p31 IF: 0.695

Cranston DW, 2022. Strong Edge-Coloring of Cubic Bipartite Graphs: A Counterexample. Discrete Applied Math. 321:258–260, https://www.sciencedirect.com/science/article/pii/S0166218X22002426 IF: 1.254

Cranston DW, 2022. List-Recoloring of Sparse Graphs. European Journal of Combinatorics. 105:103562,  https://www.sciencedirect.com/science/article/pii/S0195669822000592 IF: 0.89

Cranston DW, Mahmoud R, 2022. In Most 6-regular Toroidal Graphs All 5-colorings are Kempe Equivalent. European Journal of Combinatorics. 104:103532, https://www.sciencedirect.com/science/article/pii/S0195669822000282 IF: 0.89

Zhao Y, Damevski K, Chen H, 2022. A Systematic Survey of Just-In-Time Software Defect Prediction. ACM Computing Surveys, https://dl.acm.org/doi/10.1145/3567550 IF: 14.324 (Q1 rank)

Imran MM, Damevski K, 2022. Using Clarification Questions to Improve Software Developers’ Web Search. Information and Software Technology, 151:107021. https://doi.org/10.1016/j.infsof.2022.107021 IF: 3.862 (Q1 rank)

Sheth V, Damevski K, 2022. Grouping Related Stack Overflow Comments for Software Developer Recommendation. Automated Software Engineering, 29(2):40, https://doi.org/10.1007/s10515-022-00339-9 IF: 1.677

Pateras J, Vaidya A, Ghosh P, 2022. Network Thermodynamics-Based Scalable Compartmental Model for Multi-Strain Epidemics. Mathematics, 10(19):3513, https://doi.org/10.3390/math10193513. IF: 2.592 (Q1 rank)

Pateras J, Ghosh P, 2022. A Computational Framework for Exploring SARS-CoV-2 Pharmacodynamic Dose and Timing Regimes. Mathematics, 10(20):3739, https://doi.org/10.3390/math10203739. IF: 2.592 (Q1 rank)

Saha J, Bose P, Dhakal S, Ghosh P, Rangachari V, 2022. Ganglioside enriched phospholipid vesicles induce cooperative Aβ oligomerization and membrane disruption. Biochemistry, 61(20):2206–2220, https://doi.org/10.1021/acs.biochem.2c00495 IF: 3.321 (Q3 rank).

Pilkiewicz KR, Rana P, Mayo ML, Ghosh P, 2022. Predicting Supramolecular Structure from the Statistics of Individual Molecular Events. Mobile Netw Appl, https://doi.org/10.1007/s11036-022-02057-8 IF: 3.077 (Q2 rank)

Al Musawi AF, Roy S, Ghosh P, 2022. Identifying accurate link predictors based on assortativity of complex networks. Sci Rep 12:18107, https://doi.org/10.1038/s41598-022-22843-4 IF: 4.997 (Q2 rank)

Roy S, Bose P, Ghosh, P, 2022. Curbing Pandemic Through Evolutionary Algorithm-Based Priority Aware Mobility Scheduling. IEEE Transactions on Intelligent Transportation Systems, https://doi.org/10.1109/TITS.2022.3230013. IF: 9.551 (Q1 rank)

Roy U, Roy S, Khan R, Ghosh P, Ghosh N, 2022. MCR: A Motif Centrality-Based Distributed Message Routing for Disaster Area Networks. IEEE Internet of Things Journal, 9(24):25337-25349,  https://doi.org/10.1109/JIOT.2022.3196150. IF: 10.238 (Q1 rank)

Sleeman WC, Kapoor R, Ghosh P, 2022. Multimodal Classification: Current Landscape, Taxonomy and Future Directions. ACM Computing Surveys, 55(7):150, https://doi.org/10.1145/3543848 IF: 14.324 (Q1 rank)

Ribeiro SP, Barh D, Andrade BS, José Santana Silva R, Costa-Rezende DH, Fonseca PLC, Tiwari S, Giovanetti M, Alcantara LCJ, Azevedo VA, Ghosh P, Diniz-Filho JAF, Loyola R, de Almeida MFB, Góes-Neto A, 2022. Long-term unsustainable patterns of development rather than recent deforestation caused the emergence of Orthocoronavirinae species. Environ Microbiol. 24(10):4714-4724, https://doi.org/10.1111/1462-2920.16121. IF: 5.476 (Q2 rank)

Korycki L, Krawczyk B, 2022. Instance exploitation for learning temporary concepts from sparsely labeled drifting data streams. Pattern Recognition, 129:108749 https://www.sciencedirect.com/science/article/pii/S0031320322002308 IF: 8.518 (Q1 rank)

Korycki L, Krawczyk B, 2022. Adversarial concept drift detection under poisoning attacks for robust data stream mining. Machine Learning, https://link.springer.com/article/10.1007/s10994-022-06177-w IF: 5.41 (Q2 rank)

Cano A, Krawczyk B, 2022. ROSE: Robust Online Self-Adjusting Ensemble for Continual Learning on Imbalanced Drifting Data Streams. Machine Learning, 111:2561-2599, https://link.springer.com/article/10.1007/s10994-022-06168-x IF: 5.41 (Q2 rank)

Ghosh K, Bellinger C, Corizzo R, Branco P, Krawczyk B, Japkowicz N, 2022. The class imbalance problem in deep learning. Machine Learning https://link.springer.com/article/10.1007/s10994-022-06268-8 IF: 5.41 (Q2 rank)

Zhang F, Li M, Zhang J, Shi W, Kurgan L, 2022. DeepPRObind: Modular Deep Learner that Accurately Predicts Structure and Disorder-annotated Protein Binding Residues. Journal of Molecular Biology, https://www.sciencedirect.com/science/article/abs/pii/S0022283623000013 IF: 6.15 (Q1 rank)

Wu Z, Basu S, Wu X, Kurgan L, 2022. qNABpredict: Quick, Accurate and Taxonomy‐aware Sequence‐based Prediction of Content of Nucleic Acid Binding Amino Acids. Protein Science, 32(1):e4544 https://pubmed.ncbi.nlm.nih.gov/36519304/ IF: 6.99 (Q1 rank)

Zhang F, Li M, Zhang J, Kurgan L, 2022. HybridRNAbind: Prediction of RNA Interacting Residues Across Structure-annotated and Disorder-annotated Proteins. Nucleic Acids Research, https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac1253/6984587  IF: 19.16 (Q1 rank)

Peng Z, Li Z, Meng Q, Zhao B, Kurgan L, 2022. CLIP: Accurate Prediction of Disordered Linear Interacting Peptides from Protein Sequences Using Co-Evolutionary Information. Briefings in Bioinformatics, https://pubmed.ncbi.nlm.nih.gov/36458437/ IF: 13.99 (Q1 rank)

Akbayrak IY, Caglayan SI, Kurgan L, Uversky VN, Coskuner-Weber O, 2022. Insights into the Structural Properties of SARS-Cov-2 Main Protease. Current Research in Structural Biology, 4:349-355 https://pubmed.ncbi.nlm.nih.gov/36466947/

Zhao B, Kurgan L, 2022. Compositional Bias of Intrinsically Disordered Proteins and Regions and Their Predictions. Biomolecules, 12(7):88 https://pubmed.ncbi.nlm.nih.gov/35883444/ IF: 6.06 (Q2 rank)

Biro B, Zhao B, Kurgan L, 2022. Complementarity of the Residue-level Protein Function and Structure Predictions in Human Proteins. Computational and Structural Biotechnology Journal, 20:2223-2234 https://pubmed.ncbi.nlm.nih.gov/35615015/ IF: 6.15 (Q1 rank)

Chen Z, Liu X, Zhao P, Li C, Wang Y, Li F, Akutsu T, Bain C, Gasser R, Li J, Yang Z, Gao X, Kurgan L, Song J, 2022. iFeatureOmega – an Integrative Platform for Engineering, Visualization and Analysis of Features from Molecular Sequences, Structural and Ligand Data Sets. Nucleic Acids Research, 50:W434–W447 https://pubmed.ncbi.nlm.nih.gov/35524557/ IF: 19.16 (Q1 rank)

Kurgan L, 2022. Resources for Computational Prediction of Intrinsic Disorder in Proteins. Methods, 204:132-141 https://pubmed.ncbi.nlm.nih.gov/35367597/ IF: 4.65 (Q2 rank)

Zhao B, Kurgan L, 2022. Deep Learning in Prediction of Intrinsic Disorder in Proteins. Computational and Structural Biotechnology Journal, 20:1286-1294 https://pubmed.ncbi.nlm.nih.gov/35356546/ IF: 6.15 (Q1 rank)

Zhao B, Kurgan L, 2022. Surveying over 100 Predictors of Intrinsic Disorder in Proteins. Expert Review of Proteomics, 18(12): 1019-1029 https://pubmed.ncbi.nlm.nih.gov/34894985/ IF: 4.25 (Q2 rank)

Ji T, Luo C, Yu L, Wang Q, Chen S, Thapa A, Li P, 2022. Energy-Efficient Computation Offloading in Mobile Edge Computing Systems with Uncertainties. IEEE Transactions on Wireless Communications, 21(8):5717-5729, https://ieeexplore.ieee.org/document/9687316 IF: 8.346 (Q1 rank)

Zhao H, Sun X, Dong J, Manic M, Zhou H, Yu H, 2022. Dual discriminator adversarial distillation for data-free model compression. Int. J. Mach. Learn. & Cyber. 13:1213–1230, https://doi.org/10.1007/s13042-021-01443-0 IF 4.377 (Q2 rank)

French E, McInnes BT, 2022. An overview of biomedical entity linking throughout the years. Journal of Biomedical Informatics, 37:104252, https://doi.org/10.1016/j.jbi.2022.104252 IF: 8.00 (Q1 rank)

Ferrell BJ, Raskin SE, Zimmerman EB, Timberline DH, McInnes BT, Krists AH, 2022. Attention-Based Models for Classifying Small Data Sets Using Community-Engaged Research Protocols: Classification System Development and Validation Pilot Study. JMIR Formative Research, 6(9):e32460, https://pubmed.ncbi.nlm.nih.gov/36066925/

Tang C, McInnes, BT, 2022. Cascade Processes with Micellar Reaction Media: Recent Advances and Future Directions. Molecules 27(17):5611, https://www.mdpi.com/1420-3049/27/17/5611 IF: 4.927 (Q2 rank)

Olex AL, French E, Burdette P, Sagiraju S, Neumann T, Gal TS, McInnes BT, 2022. TopEx: topic exploration of COVID-19 corpora-Results from the BioCreative VII Challenge Track 4. Database, 2022:baac063 https://doi.org/10.1093/database/baac063 IF: 4.46 (Q1 rank)

McInnes BT, Downie JS, Hao Y, Jett J, Keating K, Nakum G, Ranjan S, Rodriguez NE, Tang J, Xiang D, Young EM, Nguyen MH, 2022. Discovering Content through Text Mining for a Synthetic Biology Knowledge System. ACS Synthetic Biology, 11(6):2043-2054, https://doi.org/10.1021/acssynbio.1c00611 IF: 5.249 (Q1 rank)

Rodriguez NE, Nguyen M, McInnes BT, 2022. Effects of data and entity ablation on multitask learning models for biomedical entity recognition. Journal of Biomedical Informatics, 130:104062, https://doi.org/10.1016/j.jbi.2022.104062. IF: 8.00 (Q1 rank)

Olex AL, McInnes BT, 2022. Temporal disambiguation of relative temporal expressions in clinical texts. Frontiers in Research Metrics and Analytics, 7:1001266, https://www.frontiersin.org/articles/10.3389/frma.2022.1001266/full

Nukavarapu S, Nadeem T, 2022. iKnight - Guarding IoT Infrastructure using Generative Adversarial Networks. IEEE Access. 10:132656-132674, https://ieeexplore.ieee.org/document/9963550 IF: 3.476 (Q2 rank)

Nadeem T, Uddin M, 2022. Acoustic-WiFi: Acoustic Support for Wi-Fi Networks in Smart Devices, IEEE Transactions on Communications. 70(6):3977-3994, https://ieeexplore.ieee.org/document/9766124 IF: 6.166 (Q1 rank)

Fronchetti F, Ritschel N, Holmes R, Li L, Soto M, Jetley R, Wiese I, Shepherd D, 2022. Language impact on productivity for industrial end users: A case study from Programmable Logic Controllers. Journal of Computer Languages, 69:101087, https://www.sciencedirect.com/science/article/pii/S2590118421000630 IF: 1.778

Ritschel N, Sawant AA, Weintrop D, Holmes R, Bacchelli A, Garcia R, Chandrika KR, Mandal A, Francis P, Shepherd DC, 2022. Training industrial end-user programmers with interactive tutorials. Software: Practice and Experience. https://onlinelibrary.wiley.com/doi/abs/10.1002/spe.3167 IF: 3.20

Pacheco A, Marin-Raventos G, Spinola R, Lopez G, Seaman C, 2022. Making Technical Debt Visible Using Hybrid Sankey Diagrams: An Industrial Case Study. International Journal of Software Engineering and Knowledge Engineering, 32(9):1-34, https://doi.org/10.1142/S0218194022500632 IF: 1.0

Ramac R, Mandic V, Tausan N, Rios N, Freire S, Perez B, Castellanos C, Correal D, Pacheco A, Lopez G, Izurieta C, Seaman C, Spinola R, 2022. Prevalence, Common Causes and Effects of Technical Debt: Results from a Family of Surveys with the IT Industry. Journal of Systems and Software, 184:111114, https://doi.org/10.1016/j.jss.2021.111114 IF:3.514

Zhou Z, Zhang B, Chen Y, Li J, Zhou Y, Lu Y, Ren K, Thai P, Zhou HS, 2022. Scriptable and composable SNARKs in the trusted hardware model. J. Comput. Secur. 30(6):757-793, https://content.iospress.com/articles/journal-of-computer-security/jcs210167

Zubair N, Ayub A, Yoo H, Ahmed I, 2022. Control Logic Obfuscation Attack in Industrial Control Systems. IEEE International Conference on Cyber Security and Resilience (IEEE CSR). https://doi.org/10.1109/CSR54599.2022.9850326

Davis M, McInnes B, Ahmed I, 2022. Forensic Investigation of Instant Messaging Services on Linux OS: Discord and Slack as Case Studies. 22nd Annual Digital Forensics Research Conference (DFRWS US). https://doi.org/10.1016/j.fsidi.2022.301401

Rais M, Ahsan M, Sharma V, Barua R, Prins R, Ahmed I, 2022. Low-magnitude Infill Structure Manipulation Attacks on FFF-based 3D Printers, 16th IFIP International Conference on Critical Infrastructure Protection (ICCIP). https://doi.org/10.1007/978-3-031-20137-0_8

Zubair N, Ayub A, Yoo H, Ahmed I, 2022. PEM: Remote Forensic Acquisition of PLC Memory in Industrial Control Systems. 9th Annual Digital Forensics Research Conference Europe (DFRWS EU). https://doi.org/10.1016/j.fsidi.2022.301336

Rais M. Awad R. Lopez Jr. J, Ahmed I, 2022. Memory Forensic Analysis of a Programmable Logic Controller in Industrial Control Systems. 9th Annual Digital Forensics Research Conference Europe (DFRWS EU). https://doi.org/10.1016/j.fsidi.2022.301339

Vijayakanthan R, Ahmed I, Ali-Gombe A, 2022. Transforming Memory Image to Sound Wave Signals for an Effective IoT Fingerprinting. 12th ACM Conference on Data and Application Security and Privacy (CODASPY). https://doi.org/10.1145/3508398.3519366

Saeedi S, Serrano M, Yang D, Brooks JP, Buck G, Arodz T, 2022. Real-valued Group Testing for Quantitative Molecular Assays. Conference on Research in Computational Molecular Biology RECOMB'22. https://link.springer.com/chapter/10.1007/978-3-031-04749-7_8 (CORE B rank)

Hernandez SM, Bulut E, 2023. Scheduled Spatial Sensing against Adversarial WiFi Sensing, IEEE International Conference on Pervasive Computing and Communications (PERCOM), Atlanta, Georgia, USA, https://www.percom.org/list-of-accepted-paper (CORE A* rank)

Hernandez SM, Touhiduzzaman M, Pidcoe PE, Bulut E, 2022. Wi-PT: Wireless Sensing based Low-cost Physical Rehabilitation Tracking, IEEE International Conference on E-health Networking, Application & Services (Healthcom), 17-19 October, Genoa, Italy (pp. 113-118) https://ieeexplore.ieee.org/document/9982743

Chapnevis A, Bulut E, 2022. Share-Not-To-Waste: Scalable IoT Networking through Subscriber Identity Sharing, 19th IEEE International Conference on Mobile Ad-Hoc and Smart Systems (MASS), October 20-22, Denver, Colorado, USA (pp. 262-263). https://ieeexplore.ieee.org/document/9973693 

Hernandez S M, Bulut E, 2022. Online Stream Sampling for Low-Memory On-Device Edge Training for WiFi Sensing, 15th ACM Conference on Security and Privacy in Wireless and Mobile Networks - ACM Workshop on Wireless Security and Machine Learning (WiseML), May 16-19, San Antonio, Texas (pp. 9-14). https://dl.acm.org/doi/10.1145/3522783.3529521 

Yucel F, Bulut E, 2022. Three-dimensional Stable Task Assignment in Semi-opportunistic Mobile Crowdsensing, 23rd IEEE International Symposium on a World of Wireless, Mobile and Multimedia Networks (WoWMoM), June 14-17, Belfast, UK (pp. 386-395). https://ieeexplore.ieee.org/document/9842821 (CORE B rank)

Bertini J, Cano A, 2022. An explainable classifier based on genetically evolved graph structures. IEEE Congress on Evolutionary Computation, https://ieeexplore.ieee.org/document/9870293 (CORE B rank)

Cachi PG, Jain S, Ventura S, Cauwenberghs G and Cios KJ, 2022. Reproducing Aplysia R-15 Bursting Neurodynamics on a Neuromorphic Microchip. 29^th IEEE Int. Conf. on Electronic Circuits and Systems, Glasgow, UK, 24-26 October, DOI: 10.1109/ICECS202256217.2022.9970967

Ciborowska A, Damevski K, 2022. Fast Changeset-based Bug Localization Using BERT. 44th International Conference on Software Engineering (ICSE 2022), Technical Track, Pittsburgh, PA, USA https://doi.org/10.1145/3510003.3510042 (CORE A* rank)

Imran M M, Jain Y, Chatterjee C, Damevski K, 2022. Data Augmentation for Improving Emotion Recognition in Software Engineering Communication. 37th IEEE/ACM International Conference on Automated Software Engineering (ASE 2022), Technical Track, Ann Arbor, MI, USA (CORE A* rank)

Frazier M, Kumar S, Damevski K, Pollock L, 2022. Investigating User Perceptions of Conversational Agents for Software-related Exploratory Web Search. 44th International Conference on Software Engineering (ICSE 2022), New Ideas and Emerging ResultsTrack, Pittsburgh, PA, USA https://doi.org/10.1145/3510455.3512778 (CORE A* rank)

Thai P, Thai MT, Vu T, Dinh TN, 2022. FastHare: Fast Hamiltonian Reduction for Large-scale Quantum Annealing,  IEEE International Conference on Quantum Computing and Engineering (QCE) https://doi.org/10.1109/QCE53715.2022.00030

Nguyen T-Thai P, Jeter T, Dinh TN, Thai MT, 2022. Blockchain-based Secure Client Selection in Federated Learning, IEEE International Conference on Blockchain and Cryptocurrency (ICBC), https://doi.org/10.1109/ICBC54727.2022.9805521

Thai P, Thai MT, Vu T, Dinh TN, 2002. SaPHyRa: A Learning Theory Approach to Ranking Nodes in Large Networks, 38th IEEE International Conference on Data Engineering (ICDE 2022)  https://doi.org/10.1109/ICDE53745.2022.00009 (CORE A* rank)

Dinh TN, Nguyen A, Nguyen U, Nguyen LG, 2022. Quantum Social Computing Approaches for Influence Maximization, 2022 IEEE Global Communications Conference (GLOBECOM ‘22), Brazil, Dec 2022.
(CORE B rank)

Roy S, Al Musawi A, Ghosh P, 2022. Cost-effective Vaccine Provisioning using Coalitional Game Theory, 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Las Vegas, NV, USA, pp. 795-798, https://doi.ieeecomputersociety.org/10.1109/BIBM55620.2022.9994915

Roy S, Ghosh P, 2022. Examining post-pandemic behaviors influencing human mobility trends. 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (BCB '22). New York, NY, USA, Article 40, https://doi.org/10.1145/3535508.3545552

Roy S, Chandra B, Anand A, Ghosh P, Ghosh N, 2022. Learning Temporal Mobility Patterns to Improve QoS in Mobile Wireless Communications. Computational Intelligence in Pattern Recognition (CIPR 2022). Lecture Notes in Networks and Systems, vol 480. Springer, Singapore, https://doi.org/10.1007/978-981-19-3089-8_34

Seng S, Yang G, Luo C, Li X, Ji H, 2022. Stochastic Optimization for Green Unmanned Aerial Communication Systems with Solar Energy. 2022 IEEE International Conference on Communications (ICC’22), Seoul, South Korea, May 16-20, https://ieeexplore.ieee.org/document/9839090 (CORE B rank)

Xiong T, Liu J, Zhang R, Zhang X, Luo C, Huang T, Liu Y, 2022. Delay-Aware Cooperative Caching for On-Chain Authentication in LEO Satellite Communications Systems, The 2022 IEEE International Conference on Communications (ICC’22), Seoul, South Korea, May 16-20, 2022. https://ieeexplore.ieee.org/document/9838696 (CORE B rank)

De Silva D, Nawaratne R, Ruminski J, Malinowski A, Manic M, 2022. Human System Interaction in Review: Advancing the Artificial Intelligence Transformation, 15th International Conference on Human System Interaction (HSI), pp. 1-5, doi: 10.1109/HSI55341.2022.9869473

Mavikumbure HS, Wickramasinghe CS, Marino DL, Cobilean V, Manic M, 2022. Anomaly Detection in Critical-Infrastructures using Autoencoders: A Survey. 48th Annual Conference of the IEEE Industrial Electronics Society (IECON 2022), pp. 1-7, doi: 10.1109/IECON49645.2022.9968505

Davis M, McInnes BT, Ahmed I, 2022. Forensic investigation of instant messaging services on linux OS: Discord and Slack as case studies. Forensic Science International: Digital Investigation 42(2022):301401, https://doi.org/10.1016/j.fsidi.2022.301401

Mahendran D, Tang C, McInnes BT, 2022. NLPatVCU CLEF 2022 ChEMU Shared Task System. Conference and Labs of the Evaluation Forum (CLEF) 2022 Working Notes. https://ceur-ws.org/Vol-3180/paper-65.pdf

Cuffy C, French E, Fehrmann S, McInnes BT, 2022. Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization. Web Conference 2022 (WWW '22), pp. 823-832, https://doi.org/10.1145/3487553.3524701

Mahendran D, Tang C, McInnes BT, 2022. Graph convolutional networks for chemical relation extraction. Web Conference 2022 (WWW '22), pp. 833-842, https://doi.org/10.1145/3487553.3524702

Ayyat M, Nukavarapu S, Nadeem T, 2022. Dynamic Deep Neural Network Adversarial Attacks for Edge-based IoT Devices. 2022 IEEE Global Communications Conference (GLOBECOM ‘22), Rio de Janeiro, Brazil, December, (CORE B rank)

Ayyat M, Nukavarapu S, Nadeem T, 2022. MirageNet - Towards a GAN-based Framework for Synthetic Network Traffic Generation, 2022 IEEE Global Communications Conference (GLOBECOM ‘22), Rio de Janeiro, Brazil, December, (CORE B rank)

Zhang Y, Krug DL, Mouza C, Shepherd DC, Pollock L, 2022. A Case Study of Middle Schoolers’ Use of Computational Thinking Concepts and Practices during Coded Music Composition. 27th ACM Conference on Innovation and Technology in Computer Science Education, vol. 1, pp. 33–39, https://dl.acm.org/doi/abs/10.1145/3502718.3524757 (CORE A rank)

Ritschel N, Fronchetti F, Holmes R, Garcia R, Shepherd DC, 2022. Can guided decomposition help end-users write larger block-based programs? a mobile robot experiment. ACM on Programming Languages, 6(OOPSLA2), pp. 233-258, https://dl.acm.org/doi/abs/10.1145/3563296 (CORE A rank)

Gomes F, Santos E, Freire S, Mendonca M, Mendes T, Spinola R, 2022. Investigating the Point of View of Project Management Practitioners on Technical Debt - A Preliminary Study on Stack Exchange. 2022 IEEE/ACM International Conference on Technical Debt (TechDebt), pp. 31-40, doi:10.1145/3524843.3528095

Soares G, Freire S, Rios N, Perez B, Castellanos C, Correal D, Mendonca M, Izurieta C, Seaman C, Spinola R, 2022. Investigating how Agile Software Practitioners Repay Technical Debt in Software Projects. 21th Brazilian Symposium on Software Quality (SBQS), Brazil, http://sbqs.sbc.org.br/2022/index.php/en-us/program/technical-sessions

Santos E, Gomes F, Freire S, Mendonca M, Souto T, Spinola R, 2022. Technical Debt on Agile Projects: Managers Point of View at Stack Exchange. 21th Brazilian Symposium on Software Quality (SBQS), Brazil, http://sbqs.sbc.org.br/2022/index.php/en-us/program/technical-sessions

Rios N, Spinola R, Travassos GH, 2022. Exploring Technical Debt on IoT Software Projects. 21th Brazilian Symposium on Software Quality (SBQS), Brazil, http://sbqs.sbc.org.br/2022/index.php/en-us/program/technical-sessions

Barbosa L, Freire S, Rios N, Ramac R, Mandic V, Tausan N, Perez B, Castellanos C, Correal D, Pacheco A, Lopez G, Maciel R, Mendonca M, Falessi D, Seaman C, Izurieta C, Spinola, R, 2022. Organizing the TD Management Landscape for Requirements and Requirements Documentation Debt. Workshop on Requirements Engineering (WER), http://hdl.handle.net/11603/25249

Rocha V, Freire S, Mendonca M, Spinola, R, 2022. Evaluating a Conceptual Framework for Supporting Technical Debt Management in Testing Activities. 7th Brazilian Symposium on Systematic and Automated Software Testing (SAST '22). Association for Computing Machinery, New York, NY, USA, pp. 69–78, https://doi.org/10.1145/3559744.3559753

Jia Y, Sun SF, Zhou HS, Du J, Gu D, 2022. Shuffle-based Private Set Union: Faster and More Secure. USENIX Security Symposium 2022. pp. 2947-2964 https://www.usenix.org/conference/usenixsecurity22/presentation/jia (CORE A* rank)

Zhang C, Zhou HS, Katz J, 2022. An Analysis of the Algebraic Group Model. Advances in Cryptology - ASIACRYPT 2022 https://doi.org/10.1007/978-3-031-22972-5_11 (CORE A rank)

Zhou Z, Zhang B, Zhou HS, Ren K, 2022. GUC-Secure Commitments via Random Oracles: New Impossibility and Feasibility. Advances in Cryptology - ASIACRYPT 2022 (CORE A rank) https://doi.org/10.1007/978-3-031-22972-5_5

Jia Y, Sun SF, Zhou HS, Gu D, 2022. A Universally Composable Non-Interactive Aggregate Cash System. Advances in Cryptology - ASIACRYPT 2022 https://doi.org/10.1007/978-3-031-22963-3_25 (CORE A rank)

Kurgan L, 2022. Machine Learning in Bioinformatics of Protein Sequences, World Scientific, ISBN: 978-981-125-857-2, 360 pages https://www.worldscientific.com/worldscibooks/10.1142/12899

Budwell C, 2022. Introduction to Counting and Permutations, In: CS-POGIL Special Issue, vol 3, no. 4 http://pac.chem.pitt.edu/index.php/pac/issue/view/19

Budwell C, 2022. Permutations and Combinations, In: CS-POGIL Special Issue, vol 3, no. 4 http://pac.chem.pitt.edu/index.php/pac/issue/view/19

Ramasamy V, Reddy Narasareddygari M, Walia G, Allen A, Duke D, Kiper J, Davis D, 2022. A Multi-institutional Analysis of CS1 Students’ Common Misconceptions of Key Programming Concepts. In: Virvou M, Tsihrintzis GA, Bourbakis NG, Jain LC (eds) Handbook on Artificial Intelligence-Empowered Applied Software Engineering. Artificial Intelligence-Enhanced Software and Systems Engineering, Springer, vol 3, pp. 127-144, https://doi.org/10.1007/978-3-031-07650-3_8

Pateras J, Vaidya A, Ghosh P, 2022. Physics-Informed Bias Method for Multiphysics Machine Learning: Reduced Order Amyloid-β Fibril Aggregation. In: Carapau F, Vaidya A (eds) Recent Advances in Mechanics and Fluid-Structure Interaction with Applications. Advances in Mathematical Fluid Mechanics. Birkhäuser, pp. 157-165 https://doi.org/10.1007/978-3-031-14324-3_7

Sleeman WC, Srinivasan S, Ghosh P, Palta J, Kapoor R, 2022. Big Data Applications in Radiation Oncology: Challenges and Opportunities. Artificial Intelligence in Cancer Diagnosis, Volume 3: Brain and Prostate Cancer, IOP Publishing, pp. 8-1 to 8-28, https://doi.org/10.1088/978-0-7503-3603-1ch8

Thai PD, Doan M, Liu W, Liu T, Li S, Zhou HS, Dinh TN, 2022. Blockchain Peer-to-Peer Network: Performance and Security.  In: Tran DA, Thai MT, Krishnamachari B (eds) Handbook on Blockchain. Springer Optimization and Its Applications, Springer, vol 194, pp. 55-83 https://doi.org/10.1007/978-3-031-07535-3_2

Dinh TN, Nguyen H, 2022. Importance sketching of influence dynamics in massive-scale networks, US Patent #US-11341585-B2

Thai MT, Dinh TN, Nguyen L, Truc N, 2022. Optimal Transactions Sharding for Scalable Blockchain, US Patent #US 11,531,982-B2

Shen X, Shen T, Afsar MR, Ye C, 2022. Motorized robotic walker guided by an image processing system for human walking assistance. US Patent #11396314.

Bhatia S, Bhatia S, Ahmed I, 2021. Automated Waterloo Rubric for Concept Map Grading. IEEE Access,  doi:10.1109/ACCESS.2021.3124672 IF: 3.37

Dahir M, Qasim S, Ahmed I, 2021. Cronus: An Automated Feedback Tool for Concept Maps. IEEE Access, doi: 10.1109/ACCESS.2021.3106509 IF: 3.37

Rais M, Li Y, Ahmed I, 2021. Dynamic-thermal and localized filament-kinetic attacks on fused filament fabrication based 3D printing process. Additive Manufacturing, https://doi.org/10.1016/j.addma.2021.102200 IF: 11.00 (Q1 rank)

Rais M, Awad R, Lopez J, Ahmed I, 2021. JTAG-based PLC memory acquisition framework for industrial control systems. Forensic Science International: Digital Investigation, https://doi.org/10.1016/j.fsidi.2021.301196

Saeedi S, Panahi A, Arodz T, 2021. Quantum semi-supervised kernel learning. Quantum Machine Intelligence 3:24 https://doi.org/10.1007/s42484-021-00053-x

Hernandez SM, Bulut E, 2021. WiFederated: Scalable WiFi Sensing using Edge Based Federated Learning. IEEE Internet of Things Journal, https://doi.org/10.1109/JIOT.2021.3137793 IF: 9.471 (Q1 rank)

Yucel F, Bulut E, 2021. Online Stable Task Assignment in Opportunistic Mobile Crowdsensing with Uncertain Trajectories. IEEE Internet of Things Journal, doi: 10.1109/JIOT.2021.3118134 https://ieeexplore.ieee.org/document/9560153 IF: 9.47 (Q1 rank)

Yucel F, Yuksel M, Bulut E, 2021. Coverage-Aware Stable Task Assignment in Opportunistic Mobile Crowdsensing. IEEE Transactions on Vehicular Technology (TVT), 70(4):3831-45. https://ieeexplore.ieee.org/document/9376990 IF: 5.98 (Q1 rank)

Erdin E, Cebe M, Akkaya K, Bulut E, Uluagac S, 2021. A scalable private Bitcoin payment channel network with privacy guarantees. Journal of Network and Computer Applications. 180:103021,doi:10.1016/j.jnca.2021.103021 . https://www.sciencedirect.com/science/article/abs/pii/S1084804521000485 IF: 6.28 (Q1 rank)

Roseberry M, Krawczyk B, Djenouri Y, Cano A, 2021. Self-Adjusting k Nearest Neighbors for Continual Learning from Multi-Label Drifting Data Streams. Neurocomputing, 442:10-25, https://www.sciencedirect.com/science/article/abs/pii/S0925231221002782 IF: 5.72 (Q1 rank)

Srivastava A, Cano A, 2021. Analysis and forecasting of rivers pH level using Deep Learning. Progress in Artificial Intelligence, https://link.springer.com/article/10.1007%2Fs13748-021-00270-2

Petri A, Bogaz B, Cano A, Barbon S, 2021. Time Series Segmentation Based on Stationarity Analysis to Improve New Samples Prediction. Sensors, 21(21):7333, https://www.mdpi.com/1424-8220/21/21/7333 IF: 3.58 (Q1 rank)

Belhadi A, Djenouri Y, Srivastava G, Cano A, Lin J, 2021. Hybrid Group Anomaly Detection for Sequence Data: Application to Trajectory Data Analytics. IEEE Transactions on Intelligent Transportation Systems, https://ieeexplore.ieee.org/document/9548779 IF: 6.49 (Q1 rank)

Djenouri Y, Belhadi H, Akli-Astouati K, Cano A, Lin J, 2021. An Ontology Matching Approach for Semantic Modeling: A Case Study in Smart Cities. Computational Intelligence, IF: 2.33

Cachi P, Ventura S, Cios KJ. 2021. CRBA: A Competitive Rate-Based Algorithm Based on Competitive Spiking Neural Networks, Frontiers in Computational Neuroscience 15: 627567 https://www.frontiersin.org/articles/10.3389/fncom.2021.627567/abstract  IF: 2:38

Cranston DW, Yancey M, 2021. Vertex Partitions into an Independent Set and a Forest with Each Component Small. SIAM J. on Discrete Math. 35(3):1769-1791 https://doi.org/10.1137/21M1392280 IF: 0.755

Chatterjee P, Damevski K, Kraft NA, Pollock L, 2021. Automatically Identifying the Quality of Developer Chats for Post Hoc Use. ACM Transactions on Software Engineering and Methodology (TOSEM), https://doi.org/10.1145/3450503 IF: 2.67

Bui N, Pham N, Barnitz JJ, Zou Z, Nguyen P, Truong H, Kim T, Farrow N, Nguyen A, Xiao J, Deterding R, Dinh T, Vu T, 2021. eBP: an ear-worn device for frequent and comfortable blood pressure monitoring, Communications of the ACM, 64(8):118-125 https://doi.org/10.1145/3470446 IF 4.65 (Q1 rank)

Pham N, Dinh T, Kim T, Raghebi Z, Bui N, Truong H, Nguyen T, Banaei-Kashani F, Halbower A, Dinh T, Nguyen V, Vu T, 2021. Detection of Microsleep Events with a Behind-the-ear Wearable System, IEEE Transactions on Mobile Computing, 2021 (https://doi.org/10.1109/TMC.2021.3090829) IF 5.54 (Q1 rank)

Ahmed S, Xiao Y, Chung T, Fung C, Yung M, Yao D, 2021. Privacy Guarantees of BLE Contact Tracing: A Case Study on COVIDWISE. IEEE Computer Magazine (accepted). IF: 3.56

Sosnkowski A, Fung C, Ramkumar S, 2021. An analysis of Twitter users’ long term political view migration using cross-account data mining. Online Social Networks and Media 26:100177 https://www.sciencedirect.com/science/article/abs/pii/S2468696421000574 IF: 3.79

Pereira G, Ghosh P, Santos A, 2021. A Bridging Centrality Plugin for GEPHI and a Case Study for Mycobacterium Tuberculosis H37Rv. IEEE/ACM Trans Comput Biol Bioinform. 18(6):2741-2746 https://doi.org/10.1109/TCBB.2021.3120937  IF: 3.71 (Q1 rank)

Roy S, Ghosh P, 2021. Scalable and distributed strategies for socially distanced human mobility. Appl Netw Sci 6, 95 https://doi.org/10.1007/s41109-021-00437-9  IF: 2.33

Bose P, Srinivasan S, Sleeman WC IV, Palta J, Kapoor R, Ghosh P, 2021. A Survey on Recent Named Entity Recognition and Relationship Extraction Techniques on Clinical Texts. Applied Sciences 11(18):8319 https://doi.org/10.3390/app11188319  IF: 2.68

Barh D, Tiwari S, Gabriel Rodrigues Gomes L, Weener ME, Alzahrani KJ, Alsharif KF, Aljabali AAA, Tambuwala MM, Lundstrom K, Hassan SS, Serrano-Aroca Á, Takayama K, Ghosh P, Redwan EM, Silva Andrade B, Soares SC, Azevedo V, Uversky VN, 2021. Potential Molecular Mechanisms of Rare Anti-Tumor Immune Response by SARS-CoV-2 in Isolated Cases of Lymphomas. Viruses 13(10):1927 https://doi.org/10.3390/v13101927  IF: 5.05

Roy S, Ghosh N, Ghosh P, and Das SK, 2021. Transcriptional Regulatory Network Topology with Applications to Bio-inspired Networking: A Survey. ACM Comput. Surv. 54(8):166 https://doi.org/10.1145/3468266  IF: 10.28 (Q1 rank)

Roy S, Biswas P, Ghosh P, 2021.Spatiotemporal tracing of pandemic spread from infection data. Sci Rep 11:17689  https://doi.org/10.1038/s41598-021-97207-5  IF: 4.38 (Q1 rank)

Rana P, Thai P, Dinh T, Ghosh P, 2021. Relevant and Non-Redundant Feature Selection for Cancer Classification and Subtype Detection. Cancers (Basel) 13(17):4297 https://doi.org/10.3390/cancers13174297  IF: 6.64 (Q1 rank)

Kumavath R, Paul S, Pavithran H, Paul MK, Ghosh P, Barh D, Azevedo V, 2021. Emergence of Cardiac Glycosides as Potential Drugs: Current and Future Scope for Cancer Therapeutics. Biomolecules 11(9):1275 https://doi.org/10.3390/biom11091275  IF: 4.88

da Silva JGV, Vieira AT, Sousa TJ, Viana MVC, Parise D, Sampaio B, da Silva AL, de Jesus LCL, de Carvalho PKRML, de Castro Oliveira L, Aburjaile FF, Martins FS, Nicoli JR, Ghosh P, Brenig B, Azevedo V, Gomide ACP, 2021. Comparative genomics and in silico gene evaluation involved in the probiotic potential of Bifidobacterium longum 51A. Gene 795:145781. https://doi.org/10.1016/j.gene.2021.145781 IF: 3.69

Nogueira WG, Jaiswal AK, Tiwari S, Ramos RTJ, Ghosh P, Barh D, Azevedo V, Soares SC, 2021. Computational identification of putative common genomic drug and vaccine targets in Mycoplasma genitalium. Genomics 113(4):2730-2743. https://doi.org/10.1016/j.ygeno.2021.06.011  IF: 5.74 (Q1 rank)

Roy S, Biswas P, Ghosh P, 2021. Effectiveness of Network Interdiction Strategies to Limit Contagion During a Pandemic, IEEE Access, 9:95862-95871 https://doi.org/10.1109/ACCESS.2021.3095252  IF: 3.37

Kapoor R, Sleeman WC, Nalluri JJ, Turner P, Bose P, Cherevko A, Srinivasan S, Syed K, Ghosh P, Hagan M and Palta JR, 2021. Automated data abstraction for quality surveillance and outcome assessment in radiation oncology. J Appl Clin Med Phys, 22:177-187. IF: 2.1

Kumavath R, Barh D, Andrade BS, Imchen M, Aburjaile FF, Ch A, Rodrigues DLN, Tiwari S, Alzahrani KJ, Góes-Neto A, Weener ME, Ghosh P, Azevedo V, 2021. The Spike of SARS-CoV-2: Uniqueness and Applications. Front Immunol. 12:663912. https://doi.org/10.3389/fimmu.2021.663912  IF: 7.56 (Q1 rank)

Silva Andrade B, Siqueira S, de Assis Soares WR, de Souza Rangel F, Santos NO, Dos Santos Freitas A, Ribeiro da Silveira P, Tiwari S, Alzahrani KJ, Góes-Neto A, Azevedo V, Ghosh P, Barh D, 2021. Long-COVID and Post-COVID Health Complications: An Up-to-Date Review on Clinical Conditions and Their Possible Molecular Mechanisms. Viruses 13(4):700. https://doi.org/10.3390/v13040700  IF: 5.05

Bose P, Roy S, Ghosh P, 2021. A Comparative NLP-Based Study on the Current Trends and Future Directions in COVID-19 Research, IEEE Access, 9:78341-78355 https://doi.org/10.1109/ACCESS.2021.3082108  IF: 3.37

Roy S, Ghosh P, 2021. A Comparative Study on Distancing, Mask and Vaccine Adoption Rates from Global Twitter Trends. Healthcare (Basel) 9(5):488. https://doi.org/10.3390/healthcare9050488  IF: 2.65

Roy S, Dutta R, Ghosh P, 2021. Identifying key indicators of job loss trends during COVID-19 and beyond. Soc Sci Humanit Open. 4(1):100163. https://doi.org/10.1016/j.ssaho.2021.100163 

Rodrigues DLN, Morais-Rodrigues F, Hurtado R, Dos Santos RG, Costa DC, Barh D, Ghosh P, Alzahrani KJ, Soares SC, Ramos R, Góes-Neto A, Azevedo V, Aburjaile FF, 2021. Pan-Resistome Insights into the Multidrug Resistance of Acinetobacter baumannii. Antibiotics (Basel) 10(5):596. https://doi.org/10.3390/antibiotics10050596 IF: 4.64

Franco EF, Rana P, Cruz A, Calderón VV, Azevedo V, Ramos RTJ, Ghosh P, 2021. Performance Comparison of Deep Learning Autoencoders for Cancer Subtype Detection Using Multi-Omics Data. Cancers (Basel) 13(9):2013. https://doi.org/10.3390/cancers13092013  IF: 6.64 (Q1 rank)

Syed K, Sleeman WC 4th, Hagan M, Palta J, Kapoor R, Ghosh P, 2021. Multi-View Data Integration Methods for Radiotherapy Structure Name Standardization. Cancers (Basel) 13(8):1796 https://doi.org/10.3390/cancers13081796  IF: 6.64 (Q1 rank)

Oliveira de Almeida M, Carvalho R, Figueira Aburjaile F, Malcher Miranda F, Canário Cerqueira J, Brenig B, Ghosh P, Ramos R, Kato RB, de Castro Soares S, Silva A, Azevedo V, Canário Viana MV, 2021. Characterization of the first vaginal Lactobacillus crispatus genomes isolated in Brazil. PeerJ 9:e11079 https://doi.org/10.7717/peerj.11079  IF: 2.98

Roy S, Cherevko A, Chakraborty S, Ghosh N, Ghosh P, 2021. Leveraging Network Science for Social Distancing to Curb Pandemic Spread, IEEE Access, 9:26196-26207 https://doi.org/10.1109/ACCESS.2021.3058206  IF: 3.37

Roy S, Dutta R, Ghosh P, 2021. Towards Dynamic lockdown strategies controlling pandemic spread under healthcare resource budget. Appl Netw Sci 6, 2 https://doi.org/10.1007/s41109-020-00349-0  IF: 2.33

Roy S, Biswas P, Ghosh P, 2021. Quantifying Mobility and Mixing Propensity in the Spatiotemporal Context of a Pandemic Spread, IEEE Transactions on Emerging Topics in Computational Intelligence, 5(3):321-331 https://doi.org/10.1109/TETCI.2021.3059007  IF: 8.28

Barh D, Tiwari S, Andrade BS, Weener ME, Góes-Neto A, Azevedo V, Ghosh P, Blum K, Ganguly NK, 2021. A novel multi-omics-based highly accurate prediction of symptoms, comorbid conditions, and possible long-term complications of COVID-19. Mol Omics 17(2):317-337. https://doi.org/10.1039/D0MO00189A  IF: 3.74

Roy S, Dutta R, Ghosh P, 2021. Optimal Time-Varying Vaccine Allocation Amid Pandemics With Uncertain Immunity Ratios, IEEE Access 9:15110-15121 https://doi.org/10.1109/ACCESS.2021.3053268  IF: 3.37

Roy S, Ghosh N, Ghosh P, Das SK, 2021. bioMCS 2.0: A distributed, energy-aware fog-based framework for data forwarding in mobile crowdsensing. Pervasive and Mobile Computing, 73:101381 http://doi.org/10.1016/j.pmcj.2021.101381 IF: 3.45

Orlovska I, Podolich O, Kukharenko O, Zaets I, Reva O, Khirunenko L, Zmejkoski D, Rogalsky S, Barh D, Tiwari S, Kumavath R, Góes-Neto A, Azevedo V, Brenig B, Ghosh P, de Vera JP, Kozyrovska N, 2021. Bacterial Cellulose Retains Robustness but Its Synthesis Declines After Exposure to a Mars-like Environment Simulated Outside the International Space Station. Astrobiology 21(6):706-717. https://doi.org/10.1089/ast.2020.2332  IF: 4.34 (Q1 rank)

Ghosh P, Pateras J, Rangachari V and Vaidya A, 2021. A Network Thermodynamic Analysis of Amyloid Aggregation along Competing Pathways. Applied Mathematics and Computation, 393:125778 https://doi.org/10.1016/j.amc.2020.125778 IF: 4.09 (Q1 rank)

Jaiswal AK, Tiwari S, Jamal SB, Oliveira LC, Sales-Campos H, Andrade-Silva LE, Oliveira CJF, Ghosh P, Barh D, Azevedo V, Soares SC, Rodrigues VR, da Silva MV, 2021. Reverse vaccinology and subtractive genomics approaches for identifying common therapeutics against Mycobacterium leprae and Mycobacterium lepromatosis. J Venom Anim Toxins Incl Trop Dis. 27:e20200027 https://doi.org/10.1590/1678-9199-jvatitd-2020-0027  IF: 2.83

Profeta R, Seyffert N, Tiwari S, Viana MVC, Jaiswal AK, Caetano AC, Bücker DH, Tavares de Oliveira L, Santos R, Gala-Garcia A, Kato RB, Padilha FF, Lima-Verde IB, Ghosh P, Barh D, Góes-Neto A, Figueiredo HCP, Soares SC, Meyer R, Brenig B, Ramos PIP, Azevedo V, Castro TLP, 2021. Comparative genomics with a multidrug-resistant Klebsiella pneumoniae isolate reveals the panorama of unexplored diversity in Northeast Brazil. Gene 26:145386. https://doi.org/10.1016/j.gene.2020.145386  IF: 3.69

Profeta R, Seyffert N, Tiwari S, Viana MVC, Jaiswal AK, Caetano AC, Bücker DH, de Oliveira LT, Santos R, Gala-Garcia A, Kato RB, Padilha FF, Lima-Verde IB, Ghosh P, Barh D, Góes-Neto A, Figueiredo HCP, Soares SC, Meyer R, Brenig B, Ramos PIP, Azevedo V, Castro TLP, 2021. Characterization of a new multidrug-resistant Brazilian K. pneumoniae isolate and 172 Klebsiella spp. sequenced strains: Genomic island, multilocus sequence typing and capsule locus dataset. Data Brief. 34:106746. https://doi.org/10.1016/j.dib.2021.106746 

Viana MVC, Profeta R, da Silva AL, Hurtado R, Cerqueira JC, Ribeiro BFS, Almeida MO, Morais-Rodrigues F, Soares SC, Oliveira M, Tavares L, Figueiredo H, Wattam AR, Barh D, Ghosh P, Silva A, Azevedo V, 2021. Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum. PLoS One 15(12):e0244210 https://doi.org/10.1371/journal.pone.0244210  IF: 3.24

Dablain D, Krawczyk B, Chawla N, 2021. DeepSMOTE: Fusing Deep Learning and SMOTE for Imbalanced Data. IEEE Transactions on Neural Networks and Learning Systems. https://doi.org/10.1109/TNNLS.2021.3136503 IF: 10.45 (Q1 rank)

Krawczyk B, 2021. Tensor decision trees for continual learning from drifting data streams. Machine Learning 110(11): 3015-3035 https://link.springer.com/article/10.1007%2Fs10994-021-06054-y IF: 2.94

Ghadermarzi S, Krawczyk B, Song J, Kurgan L, 2021. XRRpred: Accurate Predictor of Crystal Structure Quality from Protein Sequence. Bioinformatics, 37(23):4366-4374 IF: 6.94 (Q1 rank) 

Zhang F, Zhao B, Shi W, Li M, Kurgan L, 2021. DeepDISOBind: Accurate Prediction of RNA-, DNA- and Protein-binding Intrinsically Disordered Residues with Deep Multi-task Learning. Briefings in Bioinformatics, IF: 11.61 (Q1 rank)

Katuwawala A, Zhao B, Kurgan L, 2021. DisoLipPred: Accurate Prediction of Disordered Lipid Binding Residues in Protein Sequences with Deep Recurrent Networks and Transfer Learning. Bioinformatics, IF: 6.94 (Q1 rank) 

Zhao B, Katuwawala A, Oldfield CJ, Hu G, Wu Z, Uversky VN, Kurgan L, 2021. Intrinsic Disorder in Human RNA-binding Proteins. Journal of Molecular Biology, 433(21):167229 https://www.sciencedirect.com/science/article/pii/S0022283621004629 IF: 5.47 (Q1 rank)

Song R, Cao B, Peng Z, Oldfield CJ, Kurgan L, Wong K-C, Yang J, 2021. Accurate Sequence-based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding Residues. Biomolecules, 11(9):1337 https://www.mdpi.com/2218-273X/11/9/1337 IF: 4.88 (Q2 rank)

Hu G, Katuwawala A, Wang K, Wu Z, Ghadermarzi S, Gao J, Kurgan L, 2021. flDPnn: Accurate Intrinsic Disorder Prediction with Putative Propensities of Disorder Functions. Nature Communications, 12:4438 https://www.nature.com/articles/s41467-021-24773-7 IF: 14.92 (Q1 rank)

Zhang J, Ghadermarzi S, Katuwawala A, Kurgan L, 2021. DNAgenie: Accurate Prediction of DNA Type Specific Binding Residues in Protein Sequences. Briefings in Bioinformatics, 22(6):bbab336 IF: 11.61 (Q1 rank)

Katuwawala A, Ghadermarzi S, Hu G, Wu Z, Kurgan L, 2021. QUARTERplus: Accurate Disorder Predictions Integrated with Interpretable Residue-level Quality Assessment Scores. Computational and Structural Biotechnology Journal, 19:2597-2606 https://www.sciencedirect.com/science/article/pii/S2001037021001781 IF: 7.27 (Q1 rank)

Akbayrak IY, Caglayan SI, Durdagi S, Kurgan L, Uversky VN, Ulver B, Dervisoglu H, Haklidir M, Hasekioglu O, Coskuner-Weber O, 2021. Structures of MERS-CoV Macro Domain in Aqueous Solution with Dynamics: Impacts of Parallel Tempering Simulation Techniques and CHARMM36m and AMBER99SB Force Field Parameters. Proteins, 89(10):1289-1299 IF: 3.76

Necci M, Piovesan D, CAID Predictors (including Kurgan L), DisProt Curators, Tosatto S, 2021. Critical Assessment of Protein Intrinsic Disorder Prediction. Nature Methods, 18(5):472-481 https://www.nature.com/articles/s41592-021-01117-3  IF: 28.55 (Q1 rank)

Chen Z, Zhao P, Li C, Li F, Xiang D, Chen Y-Z, Akutsu T, Daly RJ, Webb GI, Zhao Q, Kurgan L, Song J, 2021. iLearnPlus: A Comprehensive and Automated Machine-learning Platform for Nucleic Acid and Protein Sequence Analysis, Prediction and Visualization. Nucleic Acids Research, 49(10):e60 IF: 16.97 (Q1 rank)

Klionski D, Kurgan L and 2917 co-authors, 2021. Guidelines for the Use and Interpretation of Assays for Monitoring Autophagy. Autophagy, 17(1):1-382 https://www.tandfonline.com/doi/full/10.1080/15548627.2020.1797280 IF: 16.02 (Q1 rank)

Seng S, Yang G, Li X, Ji H, and Luo C, 2021. Energy-efficient communications in unmanned aerial relaying systems, IEEE Transactions on Network Science and Engineering (TNSE), 8(4):2780-2791 https://ieeexplore.ieee.org/abstract/document/9372874 IF: 3.894 (Q1 rank)

Mahendran D, Luo C, McInnes BT, 2021. Review: Privacy-Preservation in the Context of Natural Language Processing. IEEE Access 9:147600-147612. https://ieeexplore.ieee.org/abstract/document/9592788. IF: 3.367

Vazquez S, Marino DL, Zafra E, Valdes M, Rodriguez-Andina J, Franquelo LG, Manic M, 2021. An Artificial Intelligence Approach for Real-Time Tuning of Weighting Factors in FCS-MPC for Power Converters, IEEE Transactions on Industrial Electronics, https://doi.org/10.1109/TIE.2021.3127046 IF 8.24 (Q1 rank)

Marino DL, Wickramasinghe CS, Tsouvalas B, Rieger C, and Manic M, 2021.  Data-Driven Correlation of Cyber and Physical Anomalies for Holistic System Health Monitoring, IEEE Access https://doi.org/10.1109/ACCESS.2021.3131274 IF 3.37

Marino DL, Wickramasinghe CS, Singh VK, Gentle J, Rieger C, and Manic M, 2021. The Virtualized Cyber-Physical Testbed for Machine Learning Anomaly Detection: A Wind Powered Grid Case Study, IEEE Access, 9:159475-159494, https://doi.org/10.1109/ACCESS.2021.3127169 IF 3.37

Wickramasinghe CS, Amarasinghe K, Marino DL, Rieger C, and Manic M, 2021. Explainable Unsupervised Machine Learning for Cyber-Physical Systems, IEEE Access, 9:131824-131843 https://doi.org/10.1109/ACCESS.2021.3112397 IF 3.37

Marino D and Manic M, 2021. Physics Enhanced Data-Driven Models with Variational Gaussian Processes, IEEE Open Journal of the Industrial Electronics Society, 2:252-265 https://doi.org/10.1109/OJIES.2021.3064820

Wickramasinghe CS, Marino DL, and Manic M, 2021. ResNet Autoencoders for Unsupervised Feature Learning From High-Dimensional Data: Deep Models Resistant to Performance Degradation, IEEE Access, 9:40511-40520 https://doi.org/10.1109/ACCESS.2021.3064819 IF 3.37

Lucia O, Martins J, Ibrahim Y, Umetani K, Gomes L, Hiraki E, Zeroug H, and Manic M, 2021. Industrial Electronics Education: Past, Present, and Future Perspectives, IEEE Industrial Electronics Magazine, 15(1):140-154 https://doi.org/10.1109/MIE.2020.3002488  IF 6.62 (Q1 rank)

Vaagensmith B, Kumar Singh V, Ivans R, Marino DL, Wickramasinghe CS, Lehmer J, Phillips T, Rieger C, Manic M, 2021.  Review of Design Elements within Power Infrastructure Cyber-Physical Test Beds as Threat Analysis Environments, Energies, 14(5):1409 https://doi.org/10.3390/en14051409

Farnsworth S, Gurdin G, Vargas J, Mulyar A, Lewinski N, McInnes BT, 2021. Extracting experimental parameter entities from scientific articles. Journal of Biomedical Informatics, https://doi.org/10.1016/j.jbi.2021.103970 IF: 6.37 (Q1 rank)

Lee K, Dobbins NJ, McInnes BT, Yetisgen M, Uzuner Ö, 2021. Transferability of neural network clinical deidentification systems. Journal of the American Medical Informatics Association, 28(12):2661-9 IF:4.50 (Q1 rank)

Mante J, Hao Y, Jett J, Joshi U, Keating K, Lu X, Nakum G, Rodriguez NE, Tang J, Terry L, Wu X, Yu E, Downie JS, McInnes BT, Nguyen MH, Sepulvado B, Young EM, Myers CJ, 2021. Synthetic Biology Knowledge System. ACS Synthetic Biology, 10(9):2276-85. IF: 5.11 (Q1 rank)

Tian S, Stevens R, McInnes BT, Lewinski NA, 2021. Machine assisted experimentation of extrusion-based bioprinting systems. Micromachines. 12(7):780. https://doi.org/10.3390/mi12070780 IF: 2.89

Mulyar A, Uzuner O, McInnes BT, 2021. MT-clinical BERT: scaling clinical information extraction with multitask learning. Journal of the American Medical Informatics Association, 28(10):2108-15 IF:4.50 (Q1 rank)

Mahendran D, Gurdin G, Lewinski N, Tang C, McInnes BT, 2021. Identifying chemical reactions and their associated attributes in patents. Frontiers in Research Metrics and Analytics, 6:688353 https://doi.org/10.3389/frma.2021.688353

Henry S, Wijesinghe DS, Myers A, McInnes BT, 2021. Using literature based discovery to gain insights into the metabolomic processes of cardiac arrest. Frontiers in Research Metrics and Analytics, 6:644728  https://doi.org/10.3389/frma.2021.644728

Olex AL, McInnes BT, 2021. Review of Temporal Reasoning in the Clinical Domain for Timeline Extraction: Where we are and where we need to be. Journal of Biomedical Informatics, 118:103784  https://doi.org/10.1016/j.jbi.2021.103784 IF: 6.32 (Q1 rank)

Soto M., Satterfield C, Fritz T, Murphy GC, Shepherd DC, and Kraft N, 2021. Observing and predicting knowledge worker stress, focus and awakeness in the wild. International Journal of Human-Computer Studies, 146:102560. IF: 3.63 (Q1 rank)

Pasandi H and Nadeem T, 2021. Towards a Learning-Based Framework for Self-Driving Design of Networking Protocols, IEEE Access, 9:34829-34844, https://doi.org/10.1109/ACCESS.2021.3061729 IF 3.37

Zhang H, Jin L, Ye C, 2021. An RGB-D Camera based Visual Positioning System for Assistive Navigation by a Robotic Navigation Aid, IEEE/CAA Journal of Automatica Sinica, 8(8):1389-1400 IF 6.17 (Q1 rank)

Broadbent A, Gharibian S, Zhou H-S, 2021. Towards Quantum One-Time Memories from Stateless Hardware. Quantum 5:429 https://doi.org/10.22331/q-2021-04-08-429 IF 6.78 (Q1 rank)

Ayub A, Yoo H, Ahmed I, 2021. Empirical Study of PLC Authentication Protocols in Industrial Control Systems. IEEE 15th Workshop on Offensive Technologies (WOOT’21), co-located with the 42nd IEEE Symposium on Security and Privacy and in cooperation with Usenix. https://doi.org/10.1109/SPW53761.2021.00058

Rais M, Li Y, Ahmed I. 2021. Spatiotemporal G-code modeling for secure FDM-based 3D printing. ACM/IEEE 12th International Conference on Cyber-Physical Systems (ICCPS '21). https://doi.org/10.1145/3450267.3450545

Panahi A, Saeedi S, Arodz T, 2021. Shapeshifter: a parameter-efficient Transformer using factorized reshaped matrices. Conference on Neural Information Processing Systems (NeurIPS'2021); https://papers.nips.cc/paper/2021/hash/09def3ebbc44ff3426b28fcd88c83554-Abstract.html (CORE A* rank)

Bokhari Y, Arodz T, 2021. PathMEx: Pathway-Based Mutual Exclusivity for Discovering Rare Cancer Driver Mutations. 21st International Conference on Computational Science (ICCS'2021); LNCS 12743:564-577; https://doi.org/10.1007/978-3-030-77964-1_43 (CORE A rank)

Zhang H, Arodz T, 2021. Learning Invariance in Deep Neural Networks. 21st International Conference on Computational Science (ICCS'2021); LNCS 12744:64-74; https://doi.org/10.1007/978-3-030-77967-2_6 (CORE A rank)

Hernandez SM, Erdag D, Bulut E, 2021. Towards Dense and Scalable Soil Sensing Through Low-Cost WiFi Sensing Networks.  IEEE 46th Conference on Local Computer Networks (LCN), Oct 4 (pp. 549-556) https://doi.org/10.1109/LCN52139.2021.9525003

Hernandez SM, Bulut E, 2021. Adversarial Occupancy Monitoring using One-Sided Through-Wall WiFi Sensing. IEEE International Conference on Communications (ICC), Jun 14 (pp. 1-6). https://doi.org/10.1109/ICC42927.2021.9500267

Chapnevis A, Güvenç İ, Njilla L, Bulut E, 2021. Collaborative Trajectory Optimization for Outage-aware Cellular-Enabled UAVs. IEEE 93rd Vehicular Technology Conference (VTC2021-Spring), Apr 25 (pp. 1-6). https://doi.org/10.1109/VTC2021-Spring51267.2021.9448776

Krawczyk B, Cano, A, 2021. Locally Linear Support Vector Machines for Imbalanced Data Classification. Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), 616-628, https://link.springer.com/chapter/10.1007/978-3-030-75762-5_49 (CORE A rank)

Imran MM, Ciborowska A, Damevski K, 2021. Automatically Selecting Follow-up Questions for Deficient Bug Reports. 18th International Conference on Mining Software Repositories (MSR), https://doi.org/10.1109/MSR52588.2021.00029, (CORE A rank)

Chatterjee P, Damevski K, Pollock L, 2021. Automatic Extraction of Opinion-based Q&A from Online Developer Chats. 43rd International Conference on Software Engineering (ICSE), https://doi.org/10.1109/ICSE43902.2021.00115, (CORE A* rank)

Bose P, Sleeman W, Syed K, Hagan M, Palta J, Kapoor R, Ghosh P, 2021. Deep neural network models to automate incident triage in the radiation oncology incident learning system. 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (BCB '21). Association for Computing Machinery, New York, NY, USA, Article 51, pp. 1-10 https://doi.org/10.1145/3459930.3469518

Roy S, Dutta R, Ghosh N, Ghosh P, 2021. Leveraging Periodicity to Improve Quality of Service in Mobile Software Defined Wireless Sensor Networks, 2021 IEEE 18th Annual Consumer Communications & Networking Conference (CCNC), 2021, pp. 1-2, https://doi.org/10.1109/CCNC49032.2021.9369647

Roy S, Dutta R, Ghosh N, Ghosh P, 2021. Adaptive Motif-based Topology Control in Mobile Software Defined Wireless Sensor Networks, 2021 IEEE 18th Annual Consumer Communications & Networking Conference (CCNC), 2021, pp. 1-6, https://doi.org/10.1109/CCNC49032.2021.9369601

Al Musawi AF, Ghosh P, 2021. Intrinsic and Simplified Complex Network Embedding Model. In: Kumar R., Mishra B.K., Pattnaik P.K. (eds) Next Generation of Internet of Things. Lecture Notes in Networks and Systems, vol 201. Springer, Singapore. https://doi.org/10.1007/978-981-16-0666-3_21

Korycki L, Krawczyk B, 2021. Concept Drift Detection from Multi-Class Imbalanced Data Streams. 37th IEEE International Conference on Data Engineering (ICDE), 1068-1079, https://ieeexplore.ieee.org/document/9458692 (CORE A* rank)

Korycki L, Krawczyk B, 2021. Streaming Decision Trees for Lifelong Learning. European Conference on Machine Learning and Knowledge Discovery in Databases (ECML/PKDD), 502-518, https://link.springer.com/chapter/10.1007%2F978-3-030-86486-6_31 (CORE A rank)

Korycki L, Krawczyk B, 2021. Low-Dimensional Representation Learning from Imbalanced Data Streams. Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), 629-641, https://link.springer.com/chapter/10.1007%2F978-3-030-75762-5_50 (CORE A rank)

Krawczyk B, Cano, A, 2021. Locally Linear Support Vector Machines for Imbalanced Data Classification. Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), 616-628, https://link.springer.com/chapter/10.1007/978-3-030-75762-5_49 (CORE A rank)

Krawczyk B, 2021. Tensor Decision Trees for Continual Learning from Drifting Data Streams. 8th IEEE International Conference on Data Science and Advanced Analytics (DSAA), 1-2, https://ieeexplore.ieee.org/document/9564150 (CORE A rank)

Krawczyk B, Bellinger C, Corizzo R, Japkowicz N, 2021. Undersampling with Support Vectors for Multi-Class Imbalanced Data Classification. International Joint Conference on Neural Networks (IJCNN), 1-7 https://ieeexplore.ieee.org/document/9533379 (CORE A rank)

Korycki L, Krawczyk B, 2021. Class-Incremental Experience Replay for Continual Learning Under Concept Drift. IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPR Workshops), 3649-3658, https://openaccess.thecvf.com/content/CVPR2021W/CLVision/html/Korycki_Class-Incremental_Experience_Replay_for_Continual_Learning_Under_Concept_Drift_CVPRW_2021_paper.html

Wickramasinghe C, Marino D, and Manic M, 2021. Deep Embedded Clustering with ResNets,” in Proc. 14th International Conference on Human System Interaction, IEEE HSI 2021, Poland, July 8-10. 2020. pp. 1-6, DOI: https://doi.org/10.1109/HSI52170.2021.9538747

Mahendran D, McInnes BT, 2021. Extracting Adverse Drug Events from Clinical Notes. In American Medical Informatics Association Joint Summits on Translational Science, 420-429. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378605/

Smith J, French E, Cramer W, Uzuner Ӧ, McInnes BT, 2021. Pseudo-data generation for the extraction of Problems, Treatments and Tests. In American Medical Informatics Association Joint Summits on Translational Science, 575-584. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378614/

Mahendran D, Ranjan S, Tang J, Nguyen M, McInnes BT, 2021. BioCreative VII-Track 1: A BERT-based System for Relation Extraction in Biomedical Text. BioCreative VII Challenge Evaluation Workshop, 71 https://biocreative.bioinformatics.udel.edu/media/store/files/2021/Track1_pos_13_BC7_submission_155.pdf

Nukavarapu S, Ayyat M, and Nadeem T, 2021. iBranchy: An Accelerated edge inference platform for IoT Devices. The 2nd Workshop on Edge Computing and Communications (EdgeComm) in conjunction of Sixth ACM/IEEE Symposium on Edge Computing (SEC 2021), San Jose, CA, Dec., 2021.

Pasandi H, Amirpour H, Nadeem T, Trimmer C, 2021. Learning-driven MU-MIMO Grouping for Multi-User Multimedia Applications Over Commodity WiFi. The 1st ACM CoNEXT Workshop on Design, Deployment, and Evaluation of Network-assisted Video Streaming (ViSNext 2021) in conjunction with 17th International Conference on emerging Networking EXperiments and Technologies (CoNEXT), Munich, Germany, Dec. 2021. https://doi.org/10.1145/3488662.3493828

Nukavarapu S and Nadeem T, 2021. Securing Edge-based IoT Networks with Semi-Supervised GANs. 5th IEEE International Workshop on Smart & Green Edge Computing and Networking (SmartEdge) in conjunction with the 2021 IEEE Conference on Pervasive Computing and Communications (PerCom), Kassel, Germany, 2021. https://doi.org/10.1109/PerComWorkshops51409.2021.9431112

Lusa Krug D, Bowman E, Barnett T, Pollock L, and Shepherd D, 2021. Code Beats: A Virtual Camp for Middle Schoolers Coding Hip Hop. 52nd ACM Technical Symposium on Computer Science Education, 397–403. (CORE A rank)

Zhang H and Ye C, 2021. Sampson Distance: A New Approach to Improving Visual-Inertial Odometry’s Accuracy, IEEE/RSJ International Conference on Intelligent Robots and Systems, 2021, pp. 9184-9189. (CORE A rank)

Jin L, Zhang H, Ye C, 2021. W-ROMA: A Wearable Robotic Device for Assistive Navigation and Object Manipulation, IEEE/RSJ International Conference on Intelligent Robots and Systems, 2021, pp. 765-770. (CORE A rank)

Zhang B, Chen Y, Li J, Zhou Y, Thai P, Zhou H-S, Ren K, 2021. Succinct Scriptable NIZK via Trusted Hardware. ESORICS (1) 2021: 430-451 https://link.springer.com/chapter/10.1007%2F978-3-030-88418-5_21 (CORE A rank)

Lu Y, Zhang B, Zhou H-S, Liu W, Zhang L, Ren K, 2021. Correlated Randomness Teleportation via Semi-trusted Hardware - Enabling Silent Multi-party Computation. ESORICS (2) 2021: 699-720 https://link.springer.com/chapter/10.1007%2F978-3-030-88428-4_34 (CORE A rank)

Kurgan L, Li M, Li Y, 2021. Methods and Tools for Intrinsic Disorder Prediction and Their Application to Systems Medicine, In: Wolkenhauer O, (Ed.), Systems Medicine: Integrative Qualitative and Computational Approaches, vol.  1, pp 159-169, Elsevier, (ISBN 978-0-12-801238-3) https://www.sciencedirect.com/science/article/pii/B9780128012383113200

Rieger CG, Mcjunkin TR, Manic M, Amarasinghe K, 2021. Systems And Methods For Control System Security, US Patent.No. 10,896,261, Publication date January 19, 2021

VCU sold invention to industry entity for commercialization, Nov. 2021: Rieger CG, Mcjunkin TR, Manic M, Amarasinghe K, “ICS Resilient Security Technology (IReST)”, Docket No: MAN-19-110

Halepovic E,  Mustafa I, Nadeem T, 2021. Video Streaming at Mobile Edge. Issued as Patent No. 11,128,682 B2 by the United States Patent and Trademark Office, September 21, 2021

Bhatt M, Mishra A, Kabir M, Blake-Gatto S, Rajendra R, Hoque M, Ahmed I, 2020. Hierarchy-Based File Fragment Classification. Machine Learning and Knowledge Extraction 2(3): 216-232; https://doi.org/10.3390/make2030012

Qasim S, Smith J, Ahmed I, 2020. Control Logic Forensics Framework using Built-in Decompiler of Engineering Software in Industrial Control Systems. Forensic Science International: Digital Investigation 33; https://doi.org/10.1016/j.fsidi.2020.301013

Bokhari Y, Alhareeri A, Arodz T, 2020. QuaDMutNetEx: a method for detecting cancer driver genes with low mutation frequency. BMC Bioinformatics 21:122; https://doi.org/10.1186/s12859-020-3449-2 IF: 3.242 (Q1 rank)

Yucel F, Yuksel M, and Bulut E, 2020. QoS-based Budget Constrained Stable Task Assignment in Mobile Crowdsensing, IEEE Transactions on Mobile Computing (TMC), doi: 10.1109/TMC.2020.2997280 https://ieeexplore.ieee.org/document/9099595 IF: 5.11 (Q1 rank)

Dhungana A, Bulut E, 2020. Energy balancing in mobile opportunistic networks with wireless charging: Single and multi-hop approaches, Ad hoc Networks,  doi: 10.1016/j.adhoc.2020.102342 https://www.sciencedirect.com/science/article/abs/pii/S1570870520306922 IF: 3.64 (Q1 rank)

Hernandez S, Bulut E, 2020. Using perceived direction information for anchorless relative indoor localization, Journal of Network and Computer Applications (JNCA), doi: 10.1016/j.jnca.2020.102714 https://www.sciencedirect.com/science/article/abs/pii/S1084804520301880 IF: 5.57 (Q1 rank)

Yucel F, Bulut E, 2020. User Satisfaction Aware Maximum Utility Task Assignment in Mobile Crowdsensing, Computer Networks, doi: 10.1016/j.comnet.2020.107156 https://www.sciencedirect.com/science/article/abs/pii/S1389128619311697 IF: 3.11

Chowdhury MU, Maeng SJ, Bulut E, Guvenc I, 2020. 3D Trajectory Optimization in UAV-Assisted Cellular Networks Considering Antenna Radiation Pattern and Backhaul Constraint, IEEE Transactions on Aerospace and Electronic Systems (TAES), doi: 10.1109/TAES.2020.2981233 https://ieeexplore.ieee.org/document/9037325 IF: 3.67 (Q1 rank)

Erdin E, Cebe M, Akkaya K, Solak S, Bulut E, Uluagac S, 2020. A Bitcoin Payment Network with Reduced Transaction Fees and Confirmation Times, Computer Networks, doi: 10.1016/j.comnet.2020.107098 https://www.sciencedirect.com/science/article/abs/pii/S1389128619308850 IF: 3.11

Djenouri Y, Djenouri D, Habbas z, Lin J, Michalak T, Cano A, 2020. When the Decomposition Meets the Constraint Satisfaction Problem. IEEE Access 8:207034-207043, https://ieeexplore.ieee.org/document/9260140 IF: 3.75 (Q1 rank)

Belhadi A, Djenouri Y, Srivastava G, Djenouri D, Cano A, Lin J, 2020. A Two-Phase Anomaly Detection Model for Secure Intelligent Transportation Ride-Hailing Trajectories. IEEE Transactions on Intelligent Transportation Systems, https://ieeexplore.ieee.org/document/9204632 IF: 6.32 (Q1 rank)

Belhadi A, Djenouri Y, Lin J, Cano A, 2020. A Data-Driven Approach for Twitter Hashtag Recommendation. IEEE Access 8:79182-79191, https://ieeexplore.ieee.org/document/9079518 IF: 3.75 (Q1 rank)

Belhadi A, Djenouri Y, Lin J, Cano A, 2020. Trajectory Outlier Detection: Algorithms, Taxonomies,Evaluation and Open Challenges. ACM Transactions on Management Information Systems 11(30):16, https://dl.acm.org/doi/10.1145/3399631

Belhadi A, Djenouri Y, Lin J, Zhang C, Cano A, 2020. Exploring Pattern Mining Algorithms for Hashtag Retrieval Problem. IEEE Access 8:10569-10583, https://ieeexplore.ieee.org/document/8951154 IF: 3.75 (Q1 rank)

Belhadi A, Djenouri Y, Lin J, Cano A, 2020. A General-Purpose Distributed Pattern Mining System. Applied Intelligence 50:2647-2662, https://link.springer.com/article/10.1007/s10489-020-01664-w IF: 3.33 (Q1 rank)

Moyano JM, Gibaja EL, Cios KJ, Ventura S. 2020. Combining Multi-Label Classifiers Based on Projections of the Output Space Using Evolutionary Algorithms. Knowledge-Based Systems, 196:105770 10.1016/j.knosys.2020.105770 IF: 5.921 (Q1 rank)

Cranston DW and Yancey MP, 2020. Sparse Graphs are Near-bipartite. SIAM Journal on Discrete Math. SIAM Journal on Discrete Math. Vol. 34(3), 1725-1768.  IF: .755

Cranston DW and Li J, 2020. Circular Flows in Planar Graphs. SIAM Journal on Discrete Math. Vol. 34(1):497–519. IF: .755

Choi I, Cranston DW, and Pierron T, 2020. Degeneracy and Colorings of Squares of Planar Graphs without 4-Cycles. Combinatorica 40(5):625-653.  IF: 1.143

Ciborowska A, Damevski K, 2020. Recognizing Developer Activity Based on Joint Modeling of Code and Command Interactions. IEEE Access 8:211653-211664, https://ieeexplore.ieee.org/document/9268948 IF: 3.75 (Q1 rank)

Bui N, Pham N, Truong H, Nguyen P,  Xiao J, Deterding R, Dinh TN, Vu T, 2020. eBP: Frequent and Comfortable Blood Pressure Monitoring from Inside Human’s Ears, GetMobile: Mobile Computing and Communications, SIGMOBILE, 2020, https://dl.acm.org/doi/abs/10.1145/3400713.3400721

Bu N, Nguyen A, Nguyen P, Truong H, Ashok A, Dinh TN, Deterding R, Vu T, 2020. Smartphone-Based SpO2 Measurement by Exploiting Wavelengths Separation and Chromophore Compensation, ACM Transactions on Sensor Networks (TOSN). https://dl.acm.org/doi/abs/10.1145/3360725 IF: 2.47

Huang S, Liu Y, Fung C, He R, Zhao Y, Yang H, Luan Z, 2020. HitAnomaly: Hierarchical Transformers for Anomaly Detection in System Log. IEEE Transactions on Network and Service Management. https://ieeexplore.ieee.org/abstract/document/9244088 IF: 3.9

Yu H, Yang J, Fung C, 2020. Fine-grained Cloud Resource Provisioning for Virtual Network Function. IEEE Transactions on Network and Service Management. https://ieeexplore.ieee.org/abstract/document/9060987 IF: 3.9

El-Latif AA Abd, Abd-El-Atty B, Mazurczyk W, Fung C, 2020. Secure data encryption based on quantum walks for 5G Internet of Things scenario. IEEE Transactions on Network and Service Management 17 (1), 118-131. https://ieeexplore.ieee.org/abstract/document/8972594. IF: 3.9

Roy S, Dutta R, Ghosh P, 2020. Recreational and philanthropic sectors are the worst-hit US industries in the COVID-19 aftermath. Elsevier Social Science and Humanities, 3:1. https://doi.org/10.1016/j.ssaho.2020.100098  IF: 1.03

Carvalho, R, Aburjaile, F, Viana, MC, Nascimento, A, Souza-Chartone, E, Jesus, LD, Zamyatnin, A, Brenig, B, Barh, D, Ghosh, P, Góes-Neto, A, Soares, S, Ramos, R, Pinto, A, Azevedo, V, 2020. Genomic characterization of multidrug-resistant Escherichia coli BH100 sub-strains. Frontiers in Microbiology. https://www.frontiersin.org/articles/10.3389/fmicb.2020.549254/abstract  IF: 4.24 (Q1 rank)

Barh D, Tiwari S, Azevedo V, Góes-Neto A, Gromiha M and Ghosh P, 2020. Multi-omics-based identification of SARS-CoV-2 infection biology and candidate drugs against COVID-19. Computers in Biology and Medicine, 126:104051. https://doi.org/10.1016/j.compbiomed.2020.104051 IF: 3.43 (Q1 rank)

Roy S, Ghosh P, 2020. Factors affecting COVID-19 infected and death rates inform lockdown-related policymaking. PLoS ONE 15(10): e0241165. https://doi.org/10.1371/journal.pone.0241165  IF: 2.74

Syed K, Sleeman W, Hagan M, Palta J, Kapoor R, Ghosh, P, 2020. Automatic Incident Triage in Radiation Oncology Incident Learning System. Healthcare, 8, 272. https://doi.org/10.3390/healthcare8030272 IF: 1.92

Imchen M, Moopantakath J, Kumavath R, Barh D, Tiwari S, Ghosh P and Azevedo V, 2020. Current Trends in Experimental and Computational Approaches to Combat Antimicrobial Resistance. Front. Genet. 11:563975. doi: 10.3389/fgene.2020.563975 IF: 3.26

Reddy D, Kumavath R, Barh D, Azevedo V, Ghosh P, 2020. Anticancer and Antiviral Properties of Cardiac Glycosides: A Review to Explore the Mechanism of Actions. Molecules, 25(16):3596. doi:10.3390/molecules25163596 IF: 3.06

Leite EL, Oliveira AF Jr, Carmo FLRD, Berkova N, Barh D, Ghosh P, Azevedo V, 2020. Bacteriocins as an alternative in the treatment of infections by Staphylococcus aureus. An Acad Bras Cienc. 92(suppl 2):e20201216. doi: 10.1590/0001-3765202020201216. PMID: 33084762.

Barh D, Silva Andrade B, Tiwari S, Giovanetti M, Góes-Neto A, Alcantara LCJ, Azevedo V, Ghosh P, 2020. Natural selection versus creation: a review on the origin of SARS-COV-2. Infez Med. 28(3):302-311. PMID: 32920565.

Franco EF, Rana P, Queiroz Cavalcante AL, da Silva AL, Cybelle Pinto Gomide A, Carneiro Folador AR, Azevedo V, Ghosh P, TJ Ramos R, 2020. Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis. Genes 11, 794. IF: 3.33

Sleeman Iv WC, Nalluri J, Syed K, Ghosh P, Krawczyk B, Hagan M, Palta J, Kapoor R, 2020. A Machine Learning method for relabeling arbitrary DICOM structure sets to TG-263 defined labels. J Biomed Inform. 109:103527. doi: 10.1016/j.jbi.2020.103527. Epub 2020 Aug 8. PMID: 32777484. IF: 3.53

Araújo CL, Blanco I, Souza L, Tiwari S, Pereira LC, Ghosh P, Azevedo V, Silva A, Folador A, 2020. In silico functional prediction of hypothetical proteins from the core genome of Corynebacterium pseudotuberculosis biovar ovis. PeerJ 8:e9643. doi: 10.7717/peerj.9643. PMID: 32913672; PMCID: PMC7456259. IF: 2.38

Syed K, Sleeman W, Soni P, Hagan M, Palta J, Kapoor R, Ghosh P, 2020. Machine-Learning Models for Multicenter Prostate Cancer Treatment Plans. J Comput Biol. doi: 10.1089/cmb.2020.0188. PMID: 32985908. IF: 1.1

Roy S, Ghosh P, Barua D, Das SK, 2020. Motifs enable communication efficiency and fault-tolerance in transcriptional networks. Sci Rep 10, 9628 https://doi.org/10.1038/s41598-020-66573-x JCR: Q1; IF: 3.99

Barh D, Tiwari S, Silva Andrade B, Giovanetti M, Almeida Costa E, Kumavath R, Ghosh P, Góes-Neto A, Carlos Junior Alcantara L, Azevedo V, 2020. Potential chimeric peptides to block the SARS-CoV-2 spike receptor-binding domain. F1000Res. 9:576. doi: 10.12688/f1000research.24074.1. PMID: 32802318; PMCID: PMC7411520.

Silva Andrade B, Ghosh P, Barh D et al, 2020. Computational screening for potential drug candidates against the SARS-CoV-2 main protease. F1000Research 9:514 (https://doi.org/10.12688/f1000research.23829.1)

Podolich O, […], Ghosh P, Barh D, Góes-Neto A, Azevedo V, de Vera JP, Kozyrovska N, 2020. Fitness of Outer Membrane Vesicles From Komagataeibacter intermedius Is Altered Under the Impact of Simulated Mars-like Stressors Outside the International Space Station. Front Microbiol. 11:1268. doi: 10.3389/fmicb.2020.01268. PMID: 32676055; PMCID: PMC7333525. JCR: Q1; IF: 4.24

Syed K, Sleeman IV W, Ivey K, Hagan M, Palta J, Kapoor R, Ghosh P, 2020. Integrated Natural Language Processing and Machine Learning Models for Standardizing Radiotherapy Structure Names. Healthcare 8, 120. IF: 1.92

Ghosh P, Rana P, Rangachari V, Saha J, Steen E, Vaidya A, 2020. A game-theoretic approach to deciphering the dynamics of amyloid-β aggregation along competing pathways. R Soc Open Sci. 7(4):191814. doi: 10.1098/rsos.191814. PMID: 32431878; PMCID: PMC7211858. IF: 2.65

Phillips MH, Serra LM, Dekker A, Ghosh P, Luk SMH, Kalet A, Mayo C, 2020. Ontologies in radiation oncology. Phys Med. 72:103-113. doi: 10.1016/j.ejmp.2020.03.017. PMID: 32247963. IF: 2.48

Santos RG, […], Ghosh P, Seyffert N, Azevedo V, 2020. Complete genome analysis of Glutamicibacter creatinolyticus from mare abscess and comparative genomics provide insight of diversity and adaptation for Glutamicibacter. Gene 741:144566. doi: 10.1016/j.gene.2020.144566. PMID: 32171826. IF: 2.98

Jaiswal AK, Tiwari S, Jamal SB, Oliveira LC, Alves LG, Azevedo V, Ghosh P, Oliveira CJ, Soares SC, 2020. The pan-genome of Treponema pallidum reveals differences in genome plasticity between subspecies related to venereal and non-venereal syphilis. BMC Genomics 21, 33 https://doi.org/10.1186/s12864-019-6430-6 IF: 3.6

Sleeman WC, Krawczyk B, 2020. Multi-class imbalanced big data classification on Spark. Knowledge-Based Systems doi: 10.1016/j.knosys.2020.106598 https://www.sciencedirect.com/science/article/pii/S0950705120307279 IF: 5.92 (Q1 rank)

Koziarski M, Wozniak M, Krawczyk B, 2020. Combined Cleaning and Resampling algorithm for multi-class imbalanced data with label noise. Knowledge-Based Systems 204: 106223 https://www.sciencedirect.com/science/article/pii/S0950705120304330 IF: 5.92 (Q1 rank)

Sleeman WC, Nalluri J, Syed K, Ghosh P, Krawczyk B, Hagan M, Palta J, Kapoor R, 2020. A Machine Learning method for relabeling arbitrary DICOM structure sets to TG-263 defined labels. Journal of Biomedical Informatics 109: 103527 https://www.sciencedirect.com/science/article/pii/S1532046420301556 IF: 3.53

Katuwawala A, Kurgan L, 2020. Comparative Assessment of Intrinsic Disorder Predictions with a Focus on Protein and Nucleic Acid-Binding Proteins. Biomolecules 10(12):1636; https://doi.org/10.3390/biom10121636 IF: 4.08

Zhao B, Katuwawala A, Oldfield CJ, Dunker K, Faraggi E, Gsponer J, Kloczkowski A, Malhis N, Mirdita M, Obradovic Z, Söding J, Steinegger M, Zhou Y, Kurgan L, 2020. DescribePROT: Database of Amino Acid-level Protein Structure and Function Predictions. Nucleic Acids Research, IF: 11.50 (Q1 rank)

Zhang F, Shi W, Zhang J, Zeng M, Li M, Kurgan L, 2020. PROBselect: Accurate Prediction of Protein-Binding Residues from Proteins Sequences via Dynamic Predictor Selection. Bioinformatics 36: i735–i744 IF: 5.61 (Q1 rank)

Peng Z, Xing Q, Kurgan L, 2020. APOD: Accurate Sequence-Based Predictor of Disordered Flexible Linkers. Bioinformatics 36:i754–i761, https://doi.org/10.1093/bioinformatics/btaa808 IF: 5.61 (Q1 rank)

Zhao B, Katuwawala A, Uversky VN, Kurgan L, 2020. IDPology of the Living Cell: Intrinsic Disorder in the Subcellular Compartments of the Human Cell. Cellular and Molecular Life Sciences https://doi.org/10.1007/s00018-020-03654-0 IF: 6.50 (Q1 rank)

Zhang J, Ghadermarzi S, Kurgan L, 2020. Prediction of Protein-Binding Residues: Dichotomy of Sequence-Based Methods Developed Using Structured Complexes Versus Disordered Proteins. Bioinformatics 36(18):4729-4738 IF: 5.61 (Q1 rank)

Gao J, Wei H, Cano A, Kurgan L, 2020. PSIONplus^m Server for Accurate Multi-Label Prediction of Ion Channels and Their Types. Biomolecules 10(6):876 https://www.mdpi.com/2218-273X/10/6/876 IF: 4.08

Liu L, Kurgan L, Wu FX, Wang J, 2020. Attention Convolutional Neural Network for Accurate Segmentation and Quantification of Lesions in Ischemic Stroke Disease. Medical Image Analysis 65:101791 https://doi.org/10.1016/j.media.2020.101791 IF: 11.15 (Q1 rank)

Chen H, Li F, Wang L, Jin Y, Chi CH, Kurgan L, Song J, Shen J, 2020. Systematic Evaluation of Machine Learning Methods for Identifying Human–Pathogen Protein–Protein Interactions. Briefings in Bioinformatics IF: 8.99 (Q1 rank)

Barik A, Katuwawala A, Hanson J, Paliwal K, Zhou Y, Kurgan L, 2020. DEPICTER: Intrinsic Disorder and Disorder Function Prediction Server. Journal of Molecular Biology 432(11):3379-3387 https://www.sciencedirect.com/science/article/pii/S0022283619307399 IF: 4.76 (Q1 rank)

Zhang J, Li W, Zeng M, Meng X, Kurgan L, Wu FX, Li M, 2020. NetEPD: A Network-Based Essential Protein Discovery Platform. Tsinghua Science and Technology https://ieeexplore.ieee.org/document/8954872 25(4):542-552 IF: 1.33

Wang K, Hu G, Wu Z, Su H, Yang J, Kurgan L, 2020. Comprehensive Survey and Comparative Assessment of RNA-Binding Residue Predictions with Analysis by RNA Type. International Journal of Molecular Sciences 21(18):6879 https://www.mdpi.com/1422-0067/21/18/6879 IF: 4.56 (Q1 rank)

Yu L, Guo Y, Wang Q, Luo C, Liao W, Li M, and Li P, 2020. Spectrum Availability Prediction for Cognitive Radio Communications: A DCG Approach. IEEE Trans. Cognitive Communications and Networking. 6(2): 476-485. https://ieeexplore.ieee.org/document/8998400 , IF: 4.574

Ji T, Luo C, Guo Y, Wang Q, Yu L, and Li P, 2020. Community Detection in Online Social Networks: A Di_erentially Private and Parsimonious Approach. IEEE Trans. Computational Social Systems. 7(1): 151 - 163. https://ieeexplore.ieee.org/document/8999786, IF: 3.29

Luo C, Ji J, Wang Q, Chen X, and Li P, 2020. Channel State Information Prediction for 5G Wireless Communications: A Deep Learning Approach. IEEE Trans. Network Science and Engineering. 7(1): 227-236. https://ieeexplore.ieee.org/document/8395053, IF: 5.213

X. Yan, Y. Ye, X. Qiu, M. Manic and H. Yu, "CMIB: Unsupervised Image Object Categorization in Multiple Visual Contexts," in IEEE Transactions on Industrial Informatics, vol. 16, no. 6, pp. 3974-3986, June 2020. https://ieeexplore.ieee.org/document/8823028 IF: 8.480

Cuffy, C, Hagiwara N, Vrana S, McInnes BT, 2020. Measuring the quality of patient-physician communication. Journal of Biomedical Informatics. 12:103589. https://www.sciencedirect.com/science/article/abs/pii/S1532046420302185  IF: 3.526

Sutphin, C, Lee K, Yepes AJ, Uzuner Ö, McInnes BT, 2020. Adverse drug event detection using reason assignments in FDA drug labels. Journal of Biomedical Informatics 110:103552. https://www.sciencedirect.com/science/article/abs/pii/S1532046420301805  IF: 3.526

N. Ritschel, V. Kovalenko, R. Holmes, R. Garcia, Shepherd DC, 2020. Comparing Block-based Programming Models for Two-armed Robots, IEEE Transactions on Software Engineering, https://doi:10.1109/TSE.2020.3027255 (CORE A*), IF: 3.31 (Q1 rank)

V. Garousi, Shepherd DC, K. Herkiloglu, 2020. Successful Engagement of Practitioners and Software Engineering Researchers: Evidence From 26 International Industry–Academia Collaborative Projects, IEEE Software, vol. 37, no. 6, pp. 65-75, Nov.-Dec. 2020, doi: https://10.1109/MS.2019.2914663. IF: 2.945

Jin L, Zhang H, Ye C, 2020. Camera Intrinsic Parameters Estimation by Visual Inertial Odometry for a Mobile Phone with Application to Assisted Navigation. IEEE/ASME Transactions on Mechatronics 25(4): 1803-1811 https://ieeexplore.ieee.org/document/9099599 IF: 5.673 (Q1 rank)

Zhang H and Ye C, 2020. Plane-Aided Visual-Inertial Odometry for 6-DOF Pose Estimation of a Robotic Navigation Aid. IEEE Access 8: 90042-90051 https://ieeexplore.ieee.org/document/9091872 IF: 3.745 (Q1 rank)

Shen T, Afsar M R, Zhang, H, Ye C, Shen X, 2020. A 3D Computer Vision-Guided Robotic Companion for Non-Contact Human Assistance and Rehabilitation. Journal of Intelligent & Robotics Systems 100:911-923 https://link.springer.com/article/10.1007/s10846-020-01258-1 IF: 2.259

Dana Dachman-Soled, Feng-Hao Liu, Elaine Shi, Hong-Sheng Zhou, 2020.Locally Decodable and Updatable Non-malleable Codes and Their Applications. J. Cryptol. 33(1): 319-355 (CORE A* rank) https://link.springer.com/article/10.1007/s00145-018-9306-z

Zhang H, Gao X, Unterman J, Arodz T, 2020. Approximation capabilities of Neural ODEs and Invertible Residual Networks. 37th International Conference on Machine Learning (ICML'2020); PMLR 119:11086-11095; http://proceedings.mlr.press/v119/zhang20h.html (CORE A* rank)

Panahi A, Saeedi S, Arodz T, 2020. word2ket: space-efficient word embeddings inspired by quantum entanglement. 8th International Conference on Learning Representations (ICLR'20) https://iclr.cc/virtual_2020/poster_HkxARkrFwB.html (CORE A* rank)

Arodz T, 2020. Generalized quantum Deutsch-Jozsa algorithm. 20th International Conference on Computational Science (ICCS'2020); LNCS 12142:465-472; https://link.springer.com/chapter/10.1007%2F978-3-030-50433-5_36 (CORE A rank)

Arodz T, 2020. Biological network visualization for targeted proteomics based on mean first-passage time in semi-lazy random walks. 20th International Conference on Computational Science (ICCS'2020); LNCS 12139:539-549; https://link.springer.com/chapter/10.1007/978-3-030-50420-5_40 (CORE A rank)

Chapnevis A, Guvenc I, Bulut E, 2020. Traffic Shifting based Resource Optimization in Aggregated IoT Communication", 45th IEEE Local Computer Networks (LCN), Nov 16-19, 2020. (Core A rank) http://www.people.vcu.edu/~ebulut/LCN20-IoT.pdf

Yucel F, Bulut E, 2020. Time-dependent Stable Task Assignment in Participatory Mobile Crowdsensing, 45th IEEE Local Computer Networks (LCN), Nov 16-19, 2020. http://www.people.vcu.edu/~ebulut/LCN20-crowdsensing.pdf

Yucel F, Bhuyan A, Bulut E, 2020. Secure, Resilient and Stable Resource Allocation for D2D-based V2X Communication, IEEE Resilience Week, Oct, 2020. https://ieeexplore.ieee.org/document/9241290

Bulut E, Dhungana A, 2020. Social-Aware Energy Balancing in Mobile Opportunistic Networks, IEEE 16th International Conference on Distributed Computing in Sensor Systems (DCOSS) - 2nd International Workshop on Wirelessly Powered Systems and Networks (WPSN), July 15-17, 2020. https://ieeexplore.ieee.org/abstract/document/9183404

Dhungana A, Bulut E, 2020. Opportunistic Wireless Crowd Charging of IoT Devices from Smartphones, IEEE 16th International Conference on Distributed Computing in Sensor Systems (DCOSS) - 2nd International Workshop on Wirelessly Powered Systems and Networks (WPSN), July 15-17, 2020. https://ieeexplore.ieee.org/abstract/document/9183664

Hernandez S, Bulut E, 2020. Lightweight and Standalone IoT based WiFi Sensing for Active Repositioning and Mobility, 21st IEEE International Symposium on a World of Wireless, Mobile and Multimedia Networks (WoWMoM), August 31 - September 03, 2020, Cork, Ireland. https://ieeexplore.ieee.org/document/9217780 (Core A rank)

Hernandez S, Bulut E, 2020. Performing WiFi Sensing with Off-the-shelf Smartphones, IEEE International Conference on Pervasive Computing and Communications (Percom) Workshops, 23-27 March 2020, Austin, TX, USA. (Best demo award) https://ieeexplore.ieee.org/document/9156194

Perez J, [...], Cano A, et. al., 2020. An Endocrine and metabolic interactomic approach to identify novel diagnostic/prognostic biomarkers and therapeutic targets in gliomas. 22nd European Congress of Endocrinology, https://www.endocrine-abstracts.org/ea/0070/ea0070aep529.htm

Moyano JM, Gibaja EL, Cios KJ, Ventura S. 2020. Tree-Shaped Ensemble of Multi-Label Classifiers using Grammar-Guided Genetic Programming. 2020 IEEE Congress on Evolutionary Computation (CEC), Glasgow, United Kingdom, pp. 1-8, DOI: 10.1109/CEC48606.2020.9185661

Cachi PG, Ventura S, Cios KJ. 2020. Fast Convergence of Competitive Spiking Neural Networks with Sample-Based Weight Initialization. 18th Int. Conf. on Information Processing and Management of Uncertainty in Knowledge-Based Systems, IPMU 2020, Lisbon. In: Lesot MJ. et al. (eds) Information Processing and Management of Uncertainty in Knowledge-Based Systems. IPMU 2020. Communications in Computer and Information Science, vol 1239, Springer https://link.springer.com/chapter/10.1007%2F978-3-030-50153-2_57

Pham N, Dinh T, Ragheb Zi, Kim T, Bui N, Nguyen P,  Truong H, Banaei-Kashani F, Halbower A, Dinh TN, Vu T, 2020. WAKE: a behind-the-ear wearable system for microsleep detection, 18th International Conference on Mobile Systems, Applications, and Services (MOBISYS’20), (Top CSRankings) https://dl.acm.org/doi/abs/10.1145/3386901.3389032

Truong H, Bui N, Raghebi Z, Ceko M, Pham N, Nguyen P, Nguyen A, Kim T, Siegfried K, Stene E, Tvrdy T, Weinman L, Payne T, Burke D, Dinh TN, D'Mello S, Banaei-Kashani F, Wager T, Goldstein P, Vu T, 2020. Painometry: wearable and objective quantification system for acute postoperative pain, 18th International Conference on Mobile Systems, Applications, and Services (MOBISYS’20), (Top CSRankings), https://dl.acm.org/doi/abs/10.1145/3386901.3389022

Moyano JM, Gibaja EL, Cios KJ, Ventura S, 2020. Generating Ensembles of Multi-Label Classifiers Using Cooperative Coevolutionary Algorithms. 24^th European Congress on Artificial Intelligence, ECAI 2020, Santiago de Compostela, Spain, pp. 1379-1386, DOI: 10.3233/FAIA200242

Bonato A, Cranston DW, Huggan M, Marbach T, Mutharasan R, 2020.  The Iterated Local Directed Transitivity Model for Social Networks.  17th Workshop on Algorithms and Models for the Web Graph. Algorithms and Models for the Web Graph, 111-123.  SGH Warsaw School of Economics, Warsaw, Poland (September 21-25, 2020).  Springer: https://link.springer.com/chapter/10.1007/978-3-030-48478-1_8

Chatterjee P, Damevski K, Kraft NA, Pollock L, 2020. Software-related Slack Chats with Disentangled Conversations. 17th International Conference on Mining Software Repositories (MSR 2020), 588-592 Seoul, Korea, June 2020 https://dl.acm.org/doi/10.1145/3379597.3387493 (CORE A rank)

Huang S, Liu Y, Fung C, He R, Zhao Y, Yang H, Luan Z, 2020. Transfer Log-based Anomaly Detection with Pseudo Labels. 2020 16th International Conference on Network and Service Management (CNSM), 1-5 https://ieeexplore.ieee.org/abstract/document/9269069 (CORE rank B)

Fung C, McCormick B, 2020. An Effective Policy Sharing Mechanism for Smart Home Networks. 2020 16th International Conference on Network and Service Management (CNSM), 1-7. https://ieeexplore.ieee.org/abstract/document/9269110. (CORE rank B)

Fung C, Pillai Y, 2020. A Privacy-Aware Collaborative DDoS Defence Network. NOMS 2020-2020 IEEE/IFIP Network Operations and Management Symposium, 1-5. https://ieeexplore.ieee.org/abstract/document/9110330. (CORE rank B)

Huang S, Liu Y, Fung C, He R, Zhao Y, Luan H Z. Paddy, 2020. An Event Log Parsing Approach using Dynamic Dictionary. NOMS 2020-2020 IEEE/IFIP Network Operations and Management Symposium, 1-8. https://ieeexplore.ieee.org/abstract/document/9110435. (CORE rank B)

Huang S, Liu Y, Fung C, An W, He R, Zhao Y, Yang H, Luan Z, 2020. A Gated Few-shot Learning Model For Anomaly Detection. 2020 International Conference on Information Networking (ICOIN), 505-509. https://ieeexplore.ieee.org/abstract/document/9016599. (CORE rank B)

Ramkumar S, Sosnkowski A, Coffman D, Fung C, Levy J, 2020. An Analysis of Twitter Users’ Political Views Using Cross-Account Data Mining. Smart Technologies in Data Science and Communication, 115-121. https://link.springer.com/chapter/10.1007/978-981-15-2407-3_16.

Rana P, Bose P, Vaidya A, Rangachari V, Ghosh P, 2020. Global fitting and parameter identifiability for amyloid-β aggregation models with competing pathways. IEEE BIBE 2020, pp. 1-8.

Roy S, Ghosh N, Ghosh P, Das SK, 2020. BioMCS: A Bio-inspired Collaborative Data Transfer Framework over Fog Computing Platforms in Mobile Crowdsensing. 21st International Conference on Distributed Computing and Networking (ICDCN 2020). Association for Computing Machinery, New York, NY, USA, Article 23, 1–10. DOI:https://doi.org/10.1145/3369740.3369788

Korycki L, Krawczyk B, 2020. Online Oversampling for Sparsely Labeled Imbalanced and Non-Stationary Data Streams. International Joint Conference on Neural Networks (IJCNN 2020): 1-8 Glasgow, United Kingdom, July 2020 https://ieeexplore.ieee.org/document/9207118 (CORE rank A)

Ghadermarzi S, Katuwawala A, Oldfield CJ, Barik A, Kurgan L, 2020. Disordered Function Conjunction: On the In-silico Function Annotation of Intrinsically Disordered Regions. Pacific Symposium on Biocomputing (PSB’2020) 25:171-182, Big Island of Hawaii, USA, January 2020 https://www.worldscientific.com/doi/abs/10.1142/9789811215636_0016

Kurgan L, Radivojac P, Sussman J, Dunker K, 2020. On the Importance of Computational Biology and Bioinformatics to the Origins and Rapid Progression of the Intrinsically Disordered Proteins Field. Pacific Symposium on Biocomputing (PSB’2020) 25:149-158, Big Island of Hawaii, USA, January 2020 https://www.worldscientific.com/doi/10.1142/9789811215636_0014

Seng S, Yang G, Li X, Ji H, and Luo C, 2020. Energy-Efficient Communications in Solar-Powered Unmanned Aerial Systems. IEEE Global Communications Conference (GLOBECOM'20), Taipei, Taiwan, Dec. 7-11, 2020. (to appear in IEEE Xplore) (CORE rank B)

J. Ulrich, C. Rieger, J. Grandio and M. Manic, 2020. Cyber-Physical Architecture for Automated Responses (CyPhAAR) Using SDN in Adversarial OT Environments, 2020 Resilience Week (RWS), Salt Lake City, ID, USA, 2020, pp. 55-63, doi: 10.1109/RWS50334.2020.9241285, https://ieeexplore.ieee.org/document/9241285.

D. Marino, J. Grandio, C. Wickramasinghe, K. Schroeder, K. Bourne,  A.V. Filippas, M. Manic, 2020. AI Augmentation for Trustworthy AI: Augmented Robot Teleoperation, 13th International Conference on Human System Interaction, IEEE HSI 2020, Tokyo, Japan, June 6-8. 2020. https://ieeexplore.ieee.org/document/9142659

C. Wickramasinghe, D. Marino, J. Grandio, and M. Manic, 2020. Trustworthy AI Development Guidelines for Human System Interaction. 13th International Conference on Human System Interaction, IEEE HSI 2020, Tokyo, Japan, June 6-8. 2020. https://ieeexplore.ieee.org/document/9142644

Mahendran D, Gurdin G, Lewinski NA, Tang C, McInnes BT, 2020. NLPatVCU CLEF 2020 ChEMU Shared Task System Description. Conference and Labs of the Evaluation Forum (CLEF) 2020 Working Notes. http://ceur-ws.org/Vol-2696/paper_215.pdf

Gurdin G, Vargas JA, Maffey LG, Olex AL, Lewinski NA, McInnes BT, 2020. Analysis of Inter-Domain and Cross-Domain Drug Review Polarity Classification. American Medical Informatics Association Summits on Translational Science. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7233089/

Olex AL, DiazGranados D, McInnes BT, Goldberg S, 2020. Local Topic Mining for Reflective Medical Writing.  American Medical Informatics Association Summits on Translational Science. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7233034/

Mahendran D,  Lewis C,  McInnes BT, 2020. NLP@ VCU: Identifying adverse effects in English tweets for unbalanced data. Fifth Social Media Mining for Health  Applications Workshop & Shared Task. https://www.aclweb.org/anthology/2020.smm4h-1.29.pdf Emad Aghajani, Csaba Nagy, Mario Linares-Vásquez,

Pasandi H.B., Nadeem T, 2020. Mac Protocol Design Optimization using Deep Learning. 2020 IEEE International Conference on Artificial Intelligence in Information and Communication (ICAIIC) (pp. 709-715), February, 2020. https://ieeexplore.ieee.org/document/9065254

Pasandi H.B., Nadeem T, 2020. CONVINCE: Collaborative Cross-Camera Video Analytics at the Edge. 2020 IEEE International Conference on Pervasive Computing and Communications (PerCom) Workshops, March 2020. https://ieeexplore.ieee.org/document/9156251

Pasandi H.B., Nadeem T, 2020. Unboxing MAC protocol design optimization using deep learning. 2020 IEEE International Conference on Pervasive Computing and Communications (PerCom) Workshops, March 2020. https://ieeexplore.ieee.org/document/9156196

Laura Moreno, Gabriele Bavota, Michele Lanza, and  Shepherd DC, 2020. Software documentation: the practitioners' perspective. ACM/IEEE 42nd International Conference on Software Engineering (ICSE '20). Association for Computing Machinery, New York, NY, USA, 590–601. DOI:https://doi.org/10.1145/3377811.3380405 (CORE A* rank)

Anastasia Ruvimova, Junhyeok Kim, Thomas Fritz, Mark Hancock, Shepherd DC, 2020. "Transport Me Away": Fostering Flow in Open Offices through Virtual Reality. 2020 CHI Conference on Human Factors in Computing Systems (CHI '20). Association for Computing Machinery, New York, NY, USA, 1–14. DOI:https://doi.org/10.1145/3313831.3376724 (CORE A* rank)

Zhang H, Ye C, 2020. DUI-VIO: Depth Uncertainty Incorporated Visual Inertial Odometry based on an RGB-D Camera. IEEE/RSJ International Conference on Intelligent Robots and Systems, 2020. http://ras.papercept.net/images/temp/IROS/files/0784.pdf (CORE A rank)

Zhang H, Jin L, Ye C, 2020. The VCU-RVI Benchmark: Evaluating Visual Inertial Odometry for Indoor Navigation Applications with an RGB-D Camera. IEEE/RSJ International Conference on Intelligent Robots and Systems http://ras.papercept.net/images/temp/IROS/files/0685.pdf  (CORE A rank)

L. Jin, H. Zhang, Ye C, 2020. Camera Intrinsic Parameters Estimation by Visual Inertial Odometry for a Mobile Phone with Application to Assisted Navigation. IEEE/ASME International Conference on Advanced Intelligent Mechatronics https://ras.papercept.net/conferences/scripts/rtf/AIM20_ContentListWeb_4.html

Zhang H, Ye C, 2020. A Visual Positioning System for Indoor Blind Navigation. IEEE International Conference on Robotics and Automation https://ieeexplore.ieee.org/document/9196782  (CORE B rank)

Jin L, Zhang H, Ye C, 2020. Human-Robot Interaction for Assisted Object Grasping by a Wearable Robotic Object Manipulation Aid for the Blind. IEEE International Conference on Human-Machine Systems https://ieeexplore.ieee.org/document/9209377

Tuyet Duong, Lei Fan, Jonathan Katz, Phuc Thai, Hong-Sheng Zhou, 2020. 2-hop Blockchain: Combining Proof-of-Work and Proof-of-Stake Securely. ESORICS (2) 2020: 697-712 (CORE A rank) https://link.springer.com/chapter/10.1007%2F978-3-030-59013-0_34

Anne Broadbent, Sevag Gharibian, Hong-Sheng Zhou, 2020. Towards Quantum One-Time Memories from Stateless Hardware. TQC 2020: 6:1-6:25 https://drops.dagstuhl.de/opus/volltexte/2020/12065/

Syed K, Sleeman WC, Nalluri JJ, Kapoor R, Hagan M, Palta J, & Ghosh P, 2020. Artificial intelligence methods in computer-aided diagnostic tools and decision support analytics for clinical informatics. In Artificial Intelligence in Precision Health (pp. 31–59). Elsevier. https://doi.org/10.1016/b978-0-12-817133-2.00002-1

Wu Z, Hu G, Oldfield CJ, Kurgan L, 2020. Prediction of Intrinsic Disorder with Quality Assessment Using QUARTER, In: Kihara D, (Ed.), Methods in Molecular Biology, vol. 2165, pp. 83-101, Springer Nature (ISBN 978-1-0716-0707-7) https://link.springer.com/protocol/10.1007/978-1-0716-0708-4_5

Oldfield CJ, Fan X, Wang, C, Dunker K, Kurgan L, 2020. Computational Prediction of Intrinsic Disorder in Protein Sequences with the disCoP Meta-predictor, In: Kragelund B and Skriver K (Eds), Methods in Molecular Biology, vol. 2141, pp. 21-35, Springer Nature (ISBN 978-1-0716-0523-3) https://link.springer.com/protocol/10.1007/978-1-0716-0524-0_2

Barik A, Kurgan L, 2020. A Comprehensive Overview of Sequence-Based Protein-Binding Residue Predictions for Structured and Disordered Regions, In: Gromiha M, (Ed.), Protein Interactions: Computational Methods, Analysis and Applications, pp. 33-58, World Scientific (ISBN: 978-981-121-187-4) https://www.worldscientific.com/doi/abs/10.1142/9789811211874_0002

Shen X, Shen T, Afsar M R, Ye C, 2020. Motorized robotic walker guided by an image processing system for human walking assistance, US Patent 10,667,980, issued on June 2, 2020

CG Rieger, TR Mcjunkin, M Manic, K Amarasinghe, Systems And Methods For Control System Security, US Patent.No. 10,896,261, Publication date January 19, 2021.